rs258170613 SNP Detail

Summary

• ID
  rs258170613
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:122639816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCCCGCA CCTACCGTTG
  GAGCCCCATC TCTCCTTGAG CTTCTTGACC TGCTCCAAGC TCAGCCCCGT GCTCTCGTTG
  ACCCCGAAGT GGCCCAGCAC CTCCTCCACG GTCTTTGTGT GAGCGTTCTC CATGGCTGCG
  GGGGCCCCGG CCGGCCTCGC CTCGCGTCCC CGCGGCCTCC TCGCCTACCG CCTCGCACTC
  S
  GGCCGCGGGC TCGTGCCACC GCGGGCGCCC GGGCGCGGAC AGCTGTCCCC TCCTTTTTCT
  TCTCCTCCTC CTCCTCCGCG GCGGCGGCGG CCGCTTCCGC CTGACCGGGG CGCTGAATCA
  CCCGAGCCCC CTCCCCCAGA AACCGCCGCA CGCGGCCCGG CCTCGCCGAG CCCGCCCGAG
  GGACTGCGAG CCTCCCGCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
ss366519161	MGP_WTSI_5_122951762	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ
rs258170613					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	G	C	C	G	C	C	C	C	G	C	C	C	C	G	C	C	C	C	C	C	G	C	C	C	C	C	C	C	G	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss366519161	MGP_WTSI_5_122951762	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:122639816 () rs orientation: forward

Symbol	Name	Function Class
Atp2a2	ATPase, Ca++ transporting, cardiac muscle, slow twitch 2	within coordinates
Cpgi16553	CpG island 16553	within coordinates
Gm43361	predicted gene 43361	905 bp downstream
Gm57291	predicted gene, 57291	692 bp upstream
Rr378565	regulatory region 378565	1999 bp upstream
Rr399329	regulatory region 399329	1700 bp upstream
Rr619900	regulatory region 619900	1177 bp distal
Rr619901	regulatory region 619901	251 bp distal
Rr619902	regulatory region 619902	132 bp proximal
Rr619903	regulatory region 619903	425 bp proximal
Rr619904	regulatory region 619904	731 bp proximal
Tssr1626	transcription start site region 1626	822 bp downstream
Tssr48697	transcription start site region 48697	1018 bp downstream
Tssr48698	transcription start site region 48698	140 bp downstream
Tssr48699	transcription start site region 48699	18 bp downstream
Tssr48700	transcription start site region 48700	28 bp upstream
Tssr48701	transcription start site region 48701	713 bp upstream
Tssr53124	transcription start site region 53124	1412 bp upstream
Tssr53125	transcription start site region 53125	1378 bp upstream
Tssr53126	transcription start site region 53126	920 bp upstream
Tssr53127	transcription start site region 53127	530 bp upstream
Tssr53128	transcription start site region 53128	488 bp upstream
Tssr53129	transcription start site region 53129	472 bp upstream
Tssr53130	transcription start site region 53130	24 bp downstream
Tssr53131	transcription start site region 53131	383 bp downstream
Tssr53132	transcription start site region 53132	409 bp downstream
Tssr53133	transcription start site region 53133	439 bp downstream
Tssr53134	transcription start site region 53134	514 bp downstream
Tssr53135	transcription start site region 53135	530 bp downstream
Tssr53136	transcription start site region 53136	874 bp downstream
Tssr53137	transcription start site region 53137	978 bp downstream