rs258173627 SNP Detail

Summary

• ID
  rs258173627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6918483 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGGGACCTG CAATAGGTGG
  TGAGACCTGG AAACTCTGGA AAAAAGAAGT TGAGGTTGTC AGGCCTTTCC TTCTCAGCAG
  AGTCGGGCGT GGGGGTGGGG GTGGGGGTGG GCACGGGTAA CCTGGGCCCT GGGCCCTAGA
  CCCGTCACTC TGGAGTGTAT AAAGTGGTCT TTCCTACCCA GGGCAAATGA AATGGGGGTT
  R
  GGGGTGTCCC TCCCTGGGCC AGCCCCAGAG CCAAGATGCG AGGATGCAGT GGCACAGAGT
  CCCTGGCCTT GGTTGCTCGT GTCCGGCTGG CAGGAGGGGG AGAGCCGGCC GATGCCCGTC
  AGCTTAGGAC AGCGGCCGCT GCGGGGGCGC CCAACGCCCC GCTCTCCCCC TCCCCAAGCT
  TGGTTCCTCT TTCCCCTCCA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683371	MGP_WTSI_19_7015605	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258173627					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683371	MGP_WTSI_19_7015605	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6918483 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	746 bp upstream
Cpgi10534	CpG island 10534	within coordinates
Gm59107	predicted gene, 59107	1107 bp downstream
Gpr137	G protein-coupled receptor 137	within coordinates
Rr405833	regulatory region 405833	247 bp upstream
Rr405834	regulatory region 405834	585 bp upstream
Rr405835	regulatory region 405835	1289 bp upstream
Rr543510	regulatory region 543510	within coordinates
Rr543511	regulatory region 543511	749 bp proximal
Rr543512	regulatory region 543512	1325 bp proximal
Tssr154697	transcription start site region 154697	760 bp upstream
Tssr154698	transcription start site region 154698	786 bp upstream
Tssr154699	transcription start site region 154699	1428 bp upstream
Tssr154700	transcription start site region 154700	1478 bp upstream
Tssr154701	transcription start site region 154701	1508 bp upstream
Tssr157902	transcription start site region 157902	313 bp downstream
Tssr157903	transcription start site region 157903	706 bp downstream
Tssr157904	transcription start site region 157904	1291 bp downstream