rs258175159 SNP Detail

Summary

• ID
  rs258175159
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:108636214 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGAAGGCGG TCTTCTGGTT
  GGCCTCGTTG GCTCCTTCCC AAAGGTCCTT GTAAATTCAA GGTCAAAATC CGTGTTTGCC
  ACCTCCACTG TCTCCAGCCG CGAGCTCGAC TGGGTAAAGG GCTCAGTGAA CTTGTGCTGC
  ATAAATGTGG AGATTTCACT GTGATCAACC AAGAGGATGG GGCGGGAGGA GGGACCCGGG
  S
  GGGGGGGGGG GTCCTGCTTT CTCCTCTCTC TCTCCTGTCC TGGAATAGAC TGCAAACAGC
  GCCACCCAAG TTCCTGGTTA GCAGCGGGAT CCCATGCAGA TCCCTTGCAG CCCGGTGCGC
  GGGGGTCTAG GCTTGGAAGC CAGCGCGGAG AGGCTTGCAA GTGAGCCGAG CTCCGGCCCG
  CGTCCGGGCC ACGTGAAGCG                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
ss369592089	MGP_WTSI_6_108609247	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	C	G	G	C	C	C	G	G	C	G	C	G	C	G	G	G	G	C	G	C	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cJ	C3H/HeJ	C57BL/6J	C57BL/10SnJ	CAST/EiJ	CBA/J	CE/J	DBA/2J	I/LnJ	JF1/MsJ	LG/J	NOD/ShiLtJ	NZO/HlLtJ	PL/J	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SM/J	SPRET/EiJ	ST/bJ	WSB/EiJ
rs258175159					SNP	G	G	C	G	G	C	C	C	G	G	C	G	C	G	C	G	G	G	G	C	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369592089	MGP_WTSI_6_108609247	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108636214 () rs orientation: forward

Symbol	Name	Function Class
0610040F04Rik	RIKEN cDNA 0610040F04 gene	within coordinates
4833447P13Rik	RIKEN cDNA 4833447P13 gene	within coordinates
Bhlhe40	basic helix-loop-helix family, member e40	1376 bp upstream
Cpgi17812	CpG island 17812	within coordinates
Gm17055	predicted gene 17055	within coordinates
Rr636153	regulatory region 636153	743 bp distal
Rr636154	regulatory region 636154	242 bp distal
Rr636155	regulatory region 636155	184 bp proximal
Rr636156	regulatory region 636156	886 bp proximal
Rr636157	regulatory region 636157	1471 bp proximal
Rr636158	regulatory region 636158	1656 bp proximal
Tssr58067	transcription start site region 58067	632 bp downstream
Tssr58068	transcription start site region 58068	583 bp downstream
Tssr58069	transcription start site region 58069	483 bp downstream
Tssr58070	transcription start site region 58070	440 bp downstream
Tssr58071	transcription start site region 58071	411 bp upstream
Tssr58072	transcription start site region 58072	1181 bp upstream
Tssr58073	transcription start site region 58073	1227 bp upstream
Tssr58074	transcription start site region 58074	1266 bp upstream
Tssr58075	transcription start site region 58075	1363 bp upstream
Tssr58076	transcription start site region 58076	1519 bp upstream
Tssr58077	transcription start site region 58077	1602 bp upstream
Tssr62390	transcription start site region 62390	150 bp downstream
Tssr62391	transcription start site region 62391	549 bp downstream