rs258176455 SNP Detail

Summary

• ID
  rs258176455
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:75546426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCATGCTGGG TCAAAAAGGG
  CACCCTGCTC TGACCCTAGG ATTTGTTTCT TAGCTAGGGA AGAGATCTTT CAAGAGATGT
  TTCTCTTCTG GCTCTCTTGG CACAAGTTTG TAATCTTAGT ACTCAGGAGG CTGAGGCAGG
  AGGCATCTTG AGTTCCAGGC CAGATTGGGC TCCGTAAAGA GACCCTGTCT CAAACAATTT
  M
  TTTTCTAAGG ATTTAAAGAA TGGAGCCAGT CCTTTGGGAG TGTGTATGGG GGTGGACAGT
  GTCCCGTACA GAGGCTCCGC CTGTCCCGGG GCGCCGGCCG TATTTGGACA TTTCGTTCTA
  TTTTTAACTT TCCCGGGACT CGAGGTTGGG GGTGGGGAGA GAAATCCTGC TTCCCCGGTG
  ACCCACGGGC TTCAGCCCTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383902913	MGP_WTSI_11_75469102	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258176455					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383902913	MGP_WTSI_11_75469102	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:75546426 () rs orientation: forward

Symbol	Name	Function Class
Cpgi3272	CpG island 3272	884 bp distal
Cpgi3273	CpG island 3273	within coordinates
Gm71962	predicted gene, 71962	1797 bp upstream
Myo1c	myosin IC	within coordinates
Rr402734	regulatory region 402734	724 bp downstream
Rr451244	regulatory region 451244	1808 bp distal
Rr451246	regulatory region 451246	1307 bp distal
Rr451247	regulatory region 451247	within coordinates
Rr451248	regulatory region 451248	284 bp proximal
Tssr103026	transcription start site region 103026	151 bp upstream
Tssr103027	transcription start site region 103027	245 bp upstream
Tssr103028	transcription start site region 103028	311 bp upstream
Tssr103029	transcription start site region 103029	328 bp upstream
Tssr103030	transcription start site region 103030	379 bp upstream
Tssr103031	transcription start site region 103031	403 bp upstream
Tssr103032	transcription start site region 103032	503 bp upstream