rs258176583 SNP Detail

Summary

• ID
  rs258176583
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:66964318 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAAATATTT TTCCTAAGGC
  ATGATATATG GTTAGGAGAA CATCTACCCC AGTTTGAACT TCTGCCTCAA GGAGATGTAA
  AGCAACATTT AATTATTTTT AATAATGTTG AGCCTGAAAG TGAAAAAGTA AACATCAAAA
  TTCCTGAGGC TGGGGGCTGG GACATTGGGA CACTGCAAAA CAAAGCGGTT GTGTGTGCGC
  R
  CGCGCGCGCG GCTTAAGACC AGGGGCGCAT GCGCAGACTT TCCTCAACGG TCGCCTGGCA
  GGTTAAAGGT CACTGAGGAA GCTGAGCTTC TTGCTCTTCG TACGGCAGCC GAGCTGCCTG
  CAGCCATGGC CTTGGCCAGA GATGCCAAGC TGGAGTCGGA CACCTTTCAG GTGCTTCAGG
  ACGTGGCCAA TCGCCTGCGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
ss375019459	MGP_WTSI_8_69035565	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CE/J	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J
rs258176583					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss375019459	MGP_WTSI_8_69035565	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:66964318 () rs orientation: forward

Symbol	Name	Function Class
Cpgi20395	CpG island 20395	within coordinates
Gm63911	predicted gene, 63911	644 bp upstream
Tktl2	transketolase-like 2	90 bp upstream
Tssr77575	transcription start site region 77575	66 bp upstream
Tssr77576	transcription start site region 77576	85 bp upstream