rs258177240 SNP Detail

Summary

• ID
  rs258177240
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:109479136 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGCCAGTCC TATATCTGTG
  AAGCAGGGTC TTCTCTTCCT GATATGGGAA GAGGTGTGGT TTTCTAAAGA GTGAAGTATA
  AACCACAATG CCACTGCTTC CTTTTACCAA GCACTACCCA GAGAGCCCTC AGGAAGCTGA
  GTGTCAGGAA CACTGGCACA TGAGGCGATT TTTCACTTTT GTGGAACAAA TAATACATTT
  G
  AAAAATGTTG TAAAAGACCT GCCTCACAAG GGTATCAAAA CATTCCCATG CAAAGAATCA
  TAAAAAAGGA TATTTAAAAT TTCAAAAGTA CATGTTCAGT AATAAACTCC AAATCTGAAA
  GATATGAGAA CTCTCTTGGC AGCAGCTTAG CTTTCCTTAG TGTTCTTCCA TAGAAAACGT
  AAACTCTATT CCTGCTTTGT                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320869951	CHEV_3_109374738	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258177240					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:109479136 () rs orientation: forward

Symbol	Name	Function Class
Rr583431	regulatory region 583431	748 bp proximal
Rr583432	regulatory region 583432	1824 bp proximal
Vav3	vav 3 oncogene	Intron