rs258178119 SNP Detail

Summary

• ID
  rs258178119
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:74534503 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCCAGTG GTGTGTGAGC
  TAAGGTCGTT AAGCACAGGA CAGGGAAGGT CTGCCTGCAG CTGCCTGGAA CCAGCACGGT
  CCGAAAGCGG ACTGAGGAAT TCAATTTCTC CTGCCCCATC CCCCGGCCCC CGCCGCGCTC
  CACCCGGGAC CACAGCCCGC CCGAGTCTGG GCGCCTGGGT TGGGACCCGG GAGCCCTGCG
  Y
  CCTGCCCTAG GAAATGCCAC CCACCCCGGC ATGATTCCTT CTTCCCACTG GGAACGTTTC
  TGCCACTCTT CTCTTCACTC TCTCAGCGAC ACTCATGTCC CCTTCCCACA TTCTCTCGCC
  TCCCCCTCCC TCCCTGTGGC CAACACTGAC GTCTATCAAG GGTGAAATGA TGGAAACTAT
  ATTCATGGGC ATGATTTCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354485013	MGP_WTSI_2_74542216	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258178119					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354485013	MGP_WTSI_2_74542216	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:74534503 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11800	CpG island 11800	within coordinates
Gm38462	predicted gene, 38462	within coordinates
Gm75671	predicted gene, 75671	721 bp downstream
Hoxd8	homeobox D8	470 bp upstream
Igs15	intergenic site 15	within coordinates
Rr44607	regulatory region 44607	1503 bp distal
Rr559361	regulatory region 559361	1112 bp distal
Rr559362	regulatory region 559362	1747 bp distal
Rr559363	regulatory region 559363	within coordinates
Rr559364	regulatory region 559364	91 bp proximal
Rr559365	regulatory region 559365	467 bp proximal
Rr559366	regulatory region 559366	571 bp proximal
Rr559367	regulatory region 559367	588 bp proximal
Tssr18420	transcription start site region 18420	373 bp upstream
Tssr18421	transcription start site region 18421	464 bp upstream
Tssr18422	transcription start site region 18422	666 bp upstream
Tssr18423	transcription start site region 18423	702 bp upstream
Tssr18424	transcription start site region 18424	758 bp upstream
Tssr18425	transcription start site region 18425	887 bp upstream
Tssr18426	transcription start site region 18426	927 bp upstream
Tssr18427	transcription start site region 18427	986 bp upstream
Tssr18428	transcription start site region 18428	1019 bp upstream
Tssr18429	transcription start site region 18429	1181 bp upstream
Tssr18430	transcription start site region 18430	1579 bp upstream
Tssr24623	transcription start site region 24623	1656 bp downstream