rs258178582 SNP Detail

Summary

• ID
  rs258178582
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:84257305 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    GTCTTCATC CCCCTTGCCT ATGTCTTACC
  AAACTCAGGC AGACTGTCCA GGTAACTGAG TTTGACTTAA AGCCTCCAGT TCAGATAAAT
  ACGATGTGCT CCATTGGAAA AGCATCTCAA AGGAAAATAG GGGACTCCAG CCATCATGAG
  W
  CTGATTAGAT TATTTCTCTC AAAGACTTGA GTCATCATAC TTTAGGGGAC CCTGAATCAA
  CACCGACAAC CACATTTCTG CAATAGGAAA TGTGAAAGTG GCccaggctg gtgtataggc
  tgatactcca ggtacttgaa agctggagca                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss319824329	CHEV_1_84276159	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258178582					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:84257305 () rs orientation: forward

Symbol	Name	Function Class
Pid1	phosphotyrosine interaction domain containing 1	within coordinates
Rr414250	regulatory region 414250	342 bp distal
Tssr12655	transcription start site region 12655	1264 bp upstream
Tssr12656	transcription start site region 12656	1205 bp upstream
Tssr12657	transcription start site region 12657	1148 bp upstream
Tssr12658	transcription start site region 12658	1125 bp upstream
Tssr12659	transcription start site region 12659	1098 bp upstream
Tssr12660	transcription start site region 12660	652 bp upstream
Tssr12661	transcription start site region 12661	347 bp downstream