rs258180513 SNP Detail

Summary

• ID
  rs258180513
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:104424502 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCCCCTTCTC TCCCTCTCTC
  TCTCTCCCTC CCCCTCTTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCTCT CTCTCTCACT
  CTCTGTGTTG TGTCTGCGCG CGCGTGCGTG CTTTATGGCA AGAAGTGAGT TTCACTAAAC
  TCACATTACA GATAGAAATC TTTTAAACTC TAGTCTACTC GTGGATGTAA AATTCCGGGG
  Y
  TTACAGGTAT TTTATAATGT GAAAATACGC GCTTATTGTA TGAATTTGCA TGTTGTGCGA
  AGTGGACTTG ATTATGATCA TCGTGGACTT TTAACTAATC ACCAGATAGC GTGGAGAAGG
  TAATGATGAT GTGTGTTTTT AATCGATTTC CAGACTTATG AAATTGCCTT CTGAGAATCC
  GTTTCATGTC AGTGTCTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324514940	CHEV_13_105078074	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258180513					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:104424502 () rs orientation: forward

Symbol	Name	Function Class
Adamts6	ADAM metallopeptidase with thrombospondin type 1 motif 6	within coordinates
Gm60746	predicted gene, 60746	779 bp upstream
Gm60750	predicted gene, 60750	641 bp downstream
Rr369763	regulatory region 369763	821 bp downstream
Rr403946	regulatory region 403946	1676 bp downstream
Rr485430	regulatory region 485430	884 bp distal
Rr485431	regulatory region 485431	111 bp distal
Rr485432	regulatory region 485432	within coordinates
Rr485433	regulatory region 485433	1295 bp proximal
Tssr120915	transcription start site region 120915	932 bp downstream
Tssr120916	transcription start site region 120916	887 bp downstream
Tssr120917	transcription start site region 120917	862 bp downstream
Tssr120918	transcription start site region 120918	847 bp downstream
Tssr120919	transcription start site region 120919	615 bp downstream
Tssr120920	transcription start site region 120920	528 bp downstream
Tssr120921	transcription start site region 120921	496 bp downstream
Tssr120922	transcription start site region 120922	470 bp downstream
Tssr120923	transcription start site region 120923	112 bp downstream
Tssr120924	transcription start site region 120924	71 bp downstream
Tssr120925	transcription start site region 120925	32 bp downstream