rs258183127 SNP Detail

Summary

• ID
  rs258183127
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  ChrX:73349105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCGGCAGT AGCAGCAGTA
  GCAATAGTAG AGGTAGTGGT AGCGGCTGCT GTGGTGAAGG AGGAGGAGCA GAGCGGACGC
  TGGTACCAAG GCCTGATCAT GGATGAGGAA TACGATGTGA TTGTGCTGGG GACAGGTCTT
  ACCGTAAGTG CCACTTCAGG CTCTCATAGC CCTGCATCAT GCCATCCCTC CCCACCCCAC
  G
  CCATCCCTCC CCACCCCACT CCATCCCGCA TTGATGCAGA GTCCGGTATC CGATCCATCC
  TCCCATCATC CTAGCTCCAG CCCTGGGAAA ACCAACCCCA TGCCCAACCC ACTACCTCAC
  CCTAGGATGT CGATTCCAGT TCCCAATTCT CTGTAGAGGG CCCCACTTTG TCCTGTGTTC
  CTGCACTCTA GTACTTAACC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
ss403782931	MGP_WTSI_X_71550838	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C57BL/6J	C57BL/6NJ	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZO/HlLtJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	ST/bJ	SWR/J	WSB/EiJ
rs258183127					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403782931	MGP_WTSI_X_71550838	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:73349105 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6ap1	ATPase, H+ transporting, lysosomal accessory protein 1			808 bp downstream
Cpgi22795	CpG island 22795			within coordinates
Gdi1	GDP dissociation inhibitor 1			Intron
				Noncoding-Transcript-Variant
Rr692006	regulatory region 692006			491 bp distal
Rr692007	regulatory region 692007			within coordinates
Tssr161327	transcription start site region 161327			1666 bp downstream
Tssr161328	transcription start site region 161328			1611 bp downstream
Tssr161329	transcription start site region 161329			1515 bp downstream
Tssr161330	transcription start site region 161330			1463 bp downstream
Tssr161331	transcription start site region 161331			1328 bp downstream
Tssr161332	transcription start site region 161332			1308 bp downstream
Tssr161333	transcription start site region 161333			463 bp downstream
Tssr161334	transcription start site region 161334			393 bp downstream
Tssr161335	transcription start site region 161335			221 bp downstream
Tssr161336	transcription start site region 161336			1684 bp upstream
Tssr163632	transcription start site region 163632			808 bp upstream