rs258183299 SNP Detail

Summary

• ID
  rs258183299
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:165469189 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAAGATAA TAGGTCAGCA
  TTAAACTAGT AATGATATCG TTGCGCTTTC TGGCTCACTT AATTGTCAAA GAATAAAACA
  GAGAAAAGGG AAAATTAAAA TTGTAACATA TAAACCAAAG AAAATAAACG GTACTATATA
  TGAATGATCA CACGGGGGCG CCAGCTAAGA ATTTCAATAG ACCTTTATGA TGACAGGAGA
  M
  CCAGCTACAC ATCGGCTCGT TGGTCTAGGG GTATGATTCT CGCTTAGGGT GCGAGAGGTC
  CCGGGTTCAA ATCCCGGACG AGCCCTGTAG CTTTTTAATT TTTCTTTTTT TTTGGTTGAT
  ACGTTAATGC ACAGAAACCT AAAATTGTTC CTGAAAATCA AACAACAAAA ACACCAAGCA
  CACTTTACAC TAAAGTAACA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320086953	CHEV_1_167571751	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258183299					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:165469189 () rs orientation: forward

Symbol	Name	Function Class
Cpgi953	CpG island 953	202 bp proximal
n-TPagg2	nuclear encoded tRNA proline 2 (anticodon AGG)	14 bp upstream
n-TPcgg2	nuclear encoded tRNA proline 2 (anticodon CGG)	651 bp downstream
Rr396497	regulatory region 396497	within coordinates
Rr396498	regulatory region 396498	463 bp upstream
Rr422408	regulatory region 422408	36 bp distal
Rr422409	regulatory region 422409	37 bp proximal