rs258184543 SNP Detail

Summary

• ID
  rs258184543
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:181163765 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCTCTTAA CCAATTTAAG
  TGCTCAACCC TTGACATTTT TTTCATGACC ACTCTCATGT TCCTGTTATG TGAGATATCC
  TTCGTTTCTA CTCCTCTGTT ATTCCACTGT GTACTGCTGT AACTAGTCTA CTGTCGAATG
  TTAGACTCTC TGCTTTACTT TTCCCCTCCT TGCTTAATTG TATACAGCAC TTGACTCTTC
  R
  TTTACTGTGT TAACATATTT AACATTGTTT TTTAGTTAAG GTTTTGTTTT GTTTAGGATA
  GTCAGATAGT ATGTGCCCAG TAAATACTTA CGGAATGAAT GGAAATGAGT TTAGTAGCAG
  CTAGGCTATT ACCCTTTCAC CAGGAAGCCA ATTAGTGAGT AGTGAGCGCT TAAGAATCAC
  CAGGCTTCTG TATCCTCAAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356780153	MGP_WTSI_2_181256677	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258184543					SNP	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	A	G	A	A	G	G	G	G	A	A	G	G	G	G	A	G	G	G	G	G	G	A	A	A	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356780153	MGP_WTSI_2_181256677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:181163765 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12929	CpG island 12929	721 bp distal
Dnajc5	DnaJ heat shock protein family (Hsp40) member C5	within coordinates
Gm74773	predicted gene, 74773	1543 bp upstream
Rr573023	regulatory region 573023	1554 bp distal
Rr573024	regulatory region 573024	1600 bp distal
Rr573025	regulatory region 573025	1015 bp distal
Rr573026	regulatory region 573026	731 bp distal
Rr573027	regulatory region 573027	664 bp proximal
Rr573028	regulatory region 573028	971 bp proximal
Tssr22317	transcription start site region 22317	1441 bp downstream
Tssr22318	transcription start site region 22318	1409 bp downstream
Tssr22319	transcription start site region 22319	1379 bp downstream