rs258184747 SNP Detail

Summary

• ID
  rs258184747
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:156561685 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCAGGCTGG CCTCGAACTC
  AGAAATCCGC CTACCTCTGC CTCCCAAGTG CTGGGATTAA AGGCGTGCAC CACCACGCCC
  GGCTTCAAGT TTTCAAGGGA TTTACCAAAA TGGTGACCCA AAGGGGAAAC CAGCTGCCAG
  TCTATCTGGA AAGGACCCTT TACCCTCTCC TAGAAGCCCA GGCTCATGCA GGAGGGTCTG
  W
  GGCCTATGTG CCAGTGTTAC ACCTCAGGCC TGGGTCAGCC AACTGCTCCT CTATGCTAGC
  CTGACTTGGG CAAGGACTCA GTCAGTCACA AAATCGTCCC CATACACACC TTACAGGACC
  TGAGGCGGGG GGCTGGGAGG GGGGTGACCA ACAGAGAAGG GTGCTGACAT TCCTCTAGGA
  CCAAGGTCTC AGACTTGGTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356242805	MGP_WTSI_2_156545501	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258184747					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356242805	MGP_WTSI_2_156545501	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:156561685 () rs orientation: forward

Symbol	Name	Function Class
4930405A21Rik	RIKEN cDNA 4930405A21 gene	within coordinates
Cpgi12557	CpG island 12557	589 bp proximal
Dlgap4	DLG associated protein 4	within coordinates
Rr55940	regulatory region 55940	within coordinates
Tssr21182	transcription start site region 21182	1244 bp upstream
Tssr21183	transcription start site region 21183	1272 bp upstream
Tssr21184	transcription start site region 21184	1304 bp upstream
Tssr21185	transcription start site region 21185	1320 bp upstream
Tssr21186	transcription start site region 21186	1509 bp upstream
Tssr21187	transcription start site region 21187	1528 bp upstream
Tssr21188	transcription start site region 21188	1545 bp upstream
Tssr21189	transcription start site region 21189	1575 bp upstream
Tssr21190	transcription start site region 21190	1599 bp upstream
Tssr21191	transcription start site region 21191	1866 bp upstream
Tssr21192	transcription start site region 21192	1898 bp upstream
Tssr27055	transcription start site region 27055	1005 bp downstream