rs258187597 SNP Detail

Summary

• ID
  rs258187597
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:102618864 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCAGT GAAGCTCCCC TTGTCTCTCC
  A
  CCACCCTCCT TTCCCCCTTC CCACC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321234811	CHEV_4_102434272	CHEVERUD	SCREENING_POP	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258187597					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:102618864 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14510	CpG island 14510	1181 bp distal
Rr596308	regulatory region 596308	1132 bp distal
Rr596309	regulatory region 596309	644 bp distal
Sgip1	SH3-domain GRB2-like (endophilin) interacting protein 1	within coordinates
Tssr38069	transcription start site region 38069	1483 bp downstream
Tssr38070	transcription start site region 38070	1389 bp downstream
Tssr38071	transcription start site region 38071	1292 bp downstream