rs258187934 SNP Detail

Summary

• ID
  rs258187934
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:113285335 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTTAAGCC TCAGGAGAAG
  GAAGGAAAGG CTGAGAGTTA GTGTTTGTCA GGGAGGTTAG GCAGGCCCTG CATTGGTGGT
  CCTAGGCACT AGTTCAAACT AGTCCTGAGA GAAATTGGAG CGGTACCAGA CTAAGCTGGG
  CTCCCTGGGG TTTGGTGCCA TCTGCTGTCT CTACTCACCC AGAAACTGAG GTGGGGGAGG
  R
  TTAGCCTTTG AGAACCTTGG AACATAATGC CTAGATTTTT GTGATCATGT TTGTGTCCTG
  GCATTCAGTA GGCCCTGAGT TAATGTTGCA TGAATCAGTA AATGAGGAAA CCAAGTGTAG
  CCTGTGCCGT TTGTCCTGCG GAAATGACCA TTTCACAAGG TTTCTCCCTA TATCTCCCCA
  CCCAGTTCCA GGGTGAGGTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369709696	MGP_WTSI_6_113258368	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258187934					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369709696	MGP_WTSI_6_113258368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:113285335 () rs orientation: forward

Symbol	Name	Function Class
Brpf1	bromodomain and PHD finger containing, 1	within coordinates
Cpgi17838	CpG island 17838	339 bp distal
Gm15492	predicted gene 15492	within coordinates
Gm43935	predicted gene, 43935	1700 bp upstream
Gm67816	predicted gene, 67816	469 bp upstream
Rr399829	regulatory region 399829	1701 bp downstream
Rr636484	regulatory region 636484	935 bp distal
Rr636485	regulatory region 636485	480 bp distal
Rr636486	regulatory region 636486	within coordinates
Rr636487	regulatory region 636487	28 bp distal
Tssr58189	transcription start site region 58189	1397 bp downstream
Tssr58190	transcription start site region 58190	1144 bp downstream
Tssr58191	transcription start site region 58191	1128 bp downstream
Tssr58192	transcription start site region 58192	513 bp downstream
Tssr58193	transcription start site region 58193	489 bp downstream
Tssr62434	transcription start site region 62434	588 bp upstream