rs258196705 SNP Detail

Summary

• ID
  rs258196705
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:132237137 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGGAAGG GATTCTGCGG AAGGGGGCGG
  GGAGGAGGAG TGGTCGGGTC TCTCCGGCCG GGATTTGCCT GGACTTGAAG ACGCTCGCTT
  TAGCAGAGAA CAAACCCAAA GAGCCACGAG AAGGCGTCCC CTCTCATTGG CCAGGAGTCC
  S
  AAGGAGCCAG GGAGGGCTCC GCATCCCCCT CCCTCCCAGG GTGGTAGTGG GGAGGGTAAA
  GAGAGAGAGG GCAGTGGGGA GGGGAAGGGA GAGCGGAGGC TGCAGTTGAT GCAACCCTAG
  CCCTAGCTTA CGTGCTCTCA GACCCTAAGC                                 
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321333906	CHEV_4_132065741	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258196705					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:132237137 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14964	CpG island 14964	within coordinates
Gm12981	predicted gene 12981	177 bp upstream
Rr377205	regulatory region 377205	1823 bp downstream
Rr377206	regulatory region 377206	within coordinates
Sesn2	sestrin 2	within coordinates
Tssr43678	transcription start site region 43678	630 bp downstream
Tssr43679	transcription start site region 43679	658 bp downstream
Tssr43680	transcription start site region 43680	667 bp downstream