rs258197452 SNP Detail

Summary

• ID
  rs258197452
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:16362859 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCATTGTCC TCTGCCTGTC
  TGTTTCACAG ACAGGCCCCA ACATGCCAGC AGTTCCTCAG GGTTTCTTGA CACTGTCCCT
  GGAGGAGAAG GGCCTCCAGA TACTTGCAAT TGGCCGCACC CTGTGCCCTG GTGATCTGTC
  TGGTTAGGTG TGTGGTAGTG AAGTGTCCTC CTACTGAGCA GGGACTGGCT AATCCAGCTT
  Y
  CTCCCAAGAC CACTCATTCC ACTGTGACCC CACAGATTGC TCCCCATCTC TGCCCTTCAG
  CAAAGAAATG AACAGGCAGG TCAGTGAAAC ACTGGGGCAG GAATCTGTGA ACTCTTGTAG
  ACTCCCAGCA GGAGTGAGAG CAAAGAGCAC TTGAAGAGAA AAAGAAAGGA AAACTTCCTG
  GTTAGGACAA TCACTTTGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss353207060	MGP_WTSI_2_16279675	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258197452					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss353207060	MGP_WTSI_2_16279675	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:16362859 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11224	CpG island 11224	823 bp distal
Plxdc2	plexin domain containing 2	within coordinates
Rr372823	regulatory region 372823	within coordinates
Tssr16300	transcription start site region 16300	1995 bp downstream
Tssr16301	transcription start site region 16301	1965 bp downstream
Tssr16302	transcription start site region 16302	1949 bp downstream
Tssr16303	transcription start site region 16303	1757 bp downstream
Tssr16304	transcription start site region 16304	1732 bp downstream
Tssr16305	transcription start site region 16305	1691 bp downstream
Tssr16306	transcription start site region 16306	1661 bp downstream
Tssr16307	transcription start site region 16307	1562 bp downstream
Tssr16308	transcription start site region 16308	1433 bp downstream
Tssr16309	transcription start site region 16309	1378 bp downstream
Tssr16310	transcription start site region 16310	1344 bp downstream
Tssr16311	transcription start site region 16311	1306 bp downstream
Tssr16312	transcription start site region 16312	1253 bp downstream