rs258198125 SNP Detail

Summary

• ID
  rs258198125
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:143118940 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTAAAAAAG GTGTTCTTAA
  ATACTAAAGC GAACTAGTTA AATAACTCCC CCACCCCTAC TTCCCTGAAA CTCTGGTGGG
  CACCTGTAGG ACAGAAACCT TTTGGGAATT CAGGGAGTGA TCTCAAAGCT CTTTGTGTGG
  AGTAGGCTGT TTTACACACG TGAGTCTTTT TGTAATTTCC TTTGCTGCCT CTTGAAGTAG
  Y
  TTTCCGGAGC TCTTTAGATT TCCAGAGTTC AGCTGCTTAG TCCCTCTTTA TGCCTTGAGC
  TGATTTTGTG GTCCCACCTT TCTGTAACTG TTTCCCTTCT TCCTGCATTG TCTTCTCGAG
  TTTCTTACTC TTTGGAGCAT CTGCTCTTCG TTTTTGTGTT TCCACAGGGT CCTGTCTTGT
  CCTGCGCCAG TCAGCCTCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404807852	MGP_WTSI_X_140770487	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258198125					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404807852	MGP_WTSI_X_140770487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:143118940 () rs orientation: forward

Symbol	Name	Function Class
Alg13	asparagine-linked glycosylation 13	within coordinates
Rr395738	regulatory region 395738	within coordinates
Rr395739	regulatory region 395739	1680 bp upstream
Tssr162278	transcription start site region 162278	113 bp downstream
Tssr162279	transcription start site region 162279	17 bp downstream
Tssr162280	transcription start site region 162280	within coordinates
Tssr162281	transcription start site region 162281	72 bp upstream
Tssr162282	transcription start site region 162282	103 bp upstream
Tssr162283	transcription start site region 162283	121 bp upstream
Tssr162284	transcription start site region 162284	135 bp upstream
Tssr162285	transcription start site region 162285	151 bp upstream
Tssr162286	transcription start site region 162286	180 bp upstream
Tssr162287	transcription start site region 162287	203 bp upstream
Tssr162288	transcription start site region 162288	220 bp upstream
Tssr162289	transcription start site region 162289	244 bp upstream
Tssr162290	transcription start site region 162290	268 bp upstream
Tssr162291	transcription start site region 162291	750 bp upstream