rs258202578 SNP Detail

Summary

• ID
  rs258202578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:44147704 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAGACCTGA ATCCTTTCTC
  ATCCTATCTC AGTTCACGAA AGACAGGGAG AAAATAGAAA AAAGCCAAGC CTAATAGTAC
  AGGCCTGTCA TCCCAAGACT TGAGCAGCTG AAACAGGATT GCAGGTTCAA GGCCAAATTG
  AGCTTTGAAA GTGGCAACCT GGACAACTTA GTGAGGCCCT GTCTTAAAAA AGTAAAAAGG
  R
  GCTCTGAGTG TGTGTGTGTG TGTGTGTGTG TGTGTGTGAG AGAGAGAGAG AGAGAGAGAG
  AGAGAGAGAG ACCTGGTCAG TAGAGTATCT GTAGGGCAAG CATGAGGATC CGAGTTTGAC
  TCCCCAGCAG CCATATAAAC ATCCAAGCCC CATGGTAAGC TTGCTGTTGG GAGAGGCAGA
  GATGGGCCAT CCTTGGAGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss371156571	MGP_WTSI_7_51753650	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258202578					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss371156571	MGP_WTSI_7_51753650	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:44147704 () rs orientation: forward

Symbol	Name	Function Class
4921540A03Rik	RIKEN cDNA 4921540A03 gene	557 bp upstream
Cpgi18969	CpG island 18969	1126 bp distal
Cpgi18970	CpG island 18970	1759 bp proximal
Emc10	ER membrane protein complex subunit 10	1751 bp upstream
Garin5a	golgi associated RAB2 interactor 5A	within coordinates
Rr380742	regulatory region 380742	205 bp downstream
Rr646108	regulatory region 646108	1612 bp distal
Rr646109	regulatory region 646109	1346 bp distal
Rr646110	regulatory region 646110	1298 bp distal
Tssr66386	transcription start site region 66386	1693 bp downstream
Tssr66387	transcription start site region 66387	1680 bp downstream
Tssr66388	transcription start site region 66388	1603 bp downstream
Tssr66389	transcription start site region 66389	1576 bp downstream
Tssr66390	transcription start site region 66390	1570 bp downstream
Tssr66391	transcription start site region 66391	1027 bp downstream
Tssr72207	transcription start site region 72207	1828 bp upstream