rs258206807 SNP Detail

Summary

• ID
  rs258206807
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5914053 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTCTTGTT TCCCTGTGGC CAGTGCAAAG
  AAATCATTAA AGTTTGGTGG TATCCATAGT CCTGGACTTG GGAAATGACA TTTAAAAATA
  TGCAtgtgta tatgtgtgtg tgtgtgtgtg tgtgtgCGCa tatatatata tatatatata
  Y
  atatatatat atatatatat atatatatat atgcatatgt atatgtatat CTCTTAGGTC
  CCAGCTACAC AGAAAATGAG AGGTTTCTTT TCAAATGTAT CGATGCCCAT GAAGTGAATA
  CAGACAGCTA TCTGCTGCCT GTTCTCTGAC                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324224092	CHEV_13_5863300	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258206807					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5914053 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr387905	regulatory region 387905	1483 bp downstream
Rr403559	regulatory region 403559	486 bp upstream
Tssr118244	transcription start site region 118244	1433 bp downstream
Tssr118245	transcription start site region 118245	1182 bp downstream
Tssr118246	transcription start site region 118246	228 bp downstream
Tssr118247	transcription start site region 118247	158 bp downstream
Tssr118248	transcription start site region 118248	432 bp upstream
Tssr118249	transcription start site region 118249	637 bp upstream
Tssr118250	transcription start site region 118250	696 bp upstream
Tssr118251	transcription start site region 118251	716 bp upstream
Tssr118252	transcription start site region 118252	796 bp upstream
Tssr121319	transcription start site region 121319	251 bp downstream
Tssr121320	transcription start site region 121320	275 bp downstream
Tssr121321	transcription start site region 121321	298 bp downstream
Tssr121322	transcription start site region 121322	319 bp downstream