rs258207893 SNP Detail

Summary

• ID
  rs258207893
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:57953966 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GAGTC ATTCCAGAGC CAGAGCTGCC
  R
  GAAACACGCC CTGCGACGCA GGAGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321136093	CHEV_4_57966838	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258207893					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:57953966 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14335	CpG island 14335	1550 bp proximal
Gm57068	predicted gene, 57068	1218 bp upstream
Rr592846	regulatory region 592846	789 bp distal
Rr592847	regulatory region 592847	within coordinates
Rr592848	regulatory region 592848	233 bp proximal
Rr592849	regulatory region 592849	1799 bp proximal
Tssr41865	transcription start site region 41865	433 bp upstream
Txn1	thioredoxin 1	Intron