rs258209497 SNP Detail

Summary

• ID
  rs258209497
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:3123974 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACGGTCATC TCAGAAGAAA
  AGAGGAGCCG GGCGTGGTGG TGCACTCCTT TAAGCCCAGC ACTCGGGAGG CAGAGGCAGG
  CAGATTTCTA AGTTCGAGGC CAGCCAGGTC TACAGAGTGA GTTCCAGGAC AGACAGGGCT
  ACACAGAGAA ACCCTGTCTC GAAAAACCAA AAAAAAAAAA AAGGAAGAAG AAGAGGAGGA
  R
  GAGGAAGAAA AGAGGGTTCC AAGAGTTTGT GCCTGTGACC TCAGCATTCA CATCAGCTGG
  AACTGCACAG CAAGGTCTGG TCTCTCAGAG TAAAGTCAAG AGGACTAGGA CTTTATGACT
  ATAGATTCTG TGTAATATAA TAACGGAAAA CTACTGACTC ATAAATCTGA TGCCATATTA
  AAATGAGCCA ATTCCTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323546765	CHEV_11_3073977	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258209497					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:3123974 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2457	CpG island 2457	1393 bp distal
Cpgi2458	CpG island 2458	168 bp distal
Rr441481	regulatory region 441481	1524 bp distal
Rr441483	regulatory region 441483	1758 bp distal
Rr441484	regulatory region 441484	1024 bp distal
Rr441485	regulatory region 441485	150 bp distal
Rr441486	regulatory region 441486	within coordinates
Rr441487	regulatory region 441487	1204 bp proximal
Rr441488	regulatory region 441488	1635 bp proximal
Rr441489	regulatory region 441489	1705 bp proximal
Sfi1	Sfi1 homolog, spindle assembly associated (yeast)	within coordinates
Tssr106448	transcription start site region 106448	1177 bp upstream
Tssr106449	transcription start site region 106449	645 bp upstream