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rs258212519 SNP Detail
Summary
  • ID
    rs258212519
  • Variation Type
    SNP
  • Alleles
    C/T
Genome Location and Flanking Sequence
  • Location
    Chr2:164674097 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                TAGTCTCAGA AAACCAAAAA
    TAAATAAACG CACAAAATTC TCAACAAGTC TCTGGCCTAA AATCAGTTTT AGAATCCCTG
    TCTTCCGGGC TGGGGCGTGC ATGAGAACCT GACTTGGTTT CCAGGACAAA ATTTAAAAAC
    CACAGACTTG GGCTAGAGTG ATGGCTCACT GTTAAGAGCA CTGACTGCTC TTCTAGAGGT
    Y
    CTGAGTTCAA CTCCCAGCAA CCACGTGGTT ACAACCATTT GTAATGGGAT CTAGTGCCCT
    CTTCTGATGT GTCTCAAGAC AGCAACAATG TATTCCTATA CATAAAATAA ATATTTTTTT
    TTTCTGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCGCT TTGTAGACCA
    GGCTGGCCTC GAACTCAGAA                                            
    
    Y = C/T
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss356441769 MGP_WTSI_2_164657677 EVA_MGPV3 EVA_MGPV3 f SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
JF1/MsJ
KK/HlJ
LEWES/EiJ
LG/J
LP/J
MA/MyJ
MOLF/EiJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
PWK/PhJ
QSi3/Ianm
QSi5/Ianm
RF/J
RIIIS/J
SEA/GnJ
SJL/J
SM/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258212519 SNP T T T T T T T T T T T T T T T T T T T C T T T T T T T T T T T T T T T T T T T T T T T T T T T T C T T T T
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss356441769 MGP_WTSI_2_164657677 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP C/T
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr2:164674097 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Cpgi12674 CpG island 12674 535 bp proximal
Ctsa cathepsin A 696 bp upstream
Neurl2 neuralized E3 ubiquitin protein ligase 2 within coordinates
Rr367364 regulatory region 367364 1585 bp upstream
Rr397479 regulatory region 397479 674 bp downstream
Tssr21656 transcription start site region 21656 685 bp upstream
Tssr21657 transcription start site region 21657 704 bp upstream
Tssr21658 transcription start site region 21658 782 bp upstream
Tssr21659 transcription start site region 21659 1589 bp upstream
Tssr21660 transcription start site region 21660 1604 bp upstream
Tssr21661 transcription start site region 21661 1664 bp upstream
Tssr21662 transcription start site region 21662 1838 bp upstream
Tssr21663 transcription start site region 21663 1899 bp upstream
Tssr21664 transcription start site region 21664 1930 bp upstream
Tssr27546 transcription start site region 27546 1261 bp downstream

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/10/2024
MGI 6.24
The Jackson Laboratory