rs258212519 SNP Detail

Summary

• ID
  rs258212519
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:164674097 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTCTCAGA AAACCAAAAA
  TAAATAAACG CACAAAATTC TCAACAAGTC TCTGGCCTAA AATCAGTTTT AGAATCCCTG
  TCTTCCGGGC TGGGGCGTGC ATGAGAACCT GACTTGGTTT CCAGGACAAA ATTTAAAAAC
  CACAGACTTG GGCTAGAGTG ATGGCTCACT GTTAAGAGCA CTGACTGCTC TTCTAGAGGT
  Y
  CTGAGTTCAA CTCCCAGCAA CCACGTGGTT ACAACCATTT GTAATGGGAT CTAGTGCCCT
  CTTCTGATGT GTCTCAAGAC AGCAACAATG TATTCCTATA CATAAAATAA ATATTTTTTT
  TTTCTGAGAC AGGGTTTCTC TGTATAGCCC TGGCTGTCCT GGAACTCGCT TTGTAGACCA
  GGCTGGCCTC GAACTCAGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356441769	MGP_WTSI_2_164657677	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258212519					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356441769	MGP_WTSI_2_164657677	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164674097 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12674	CpG island 12674	535 bp proximal
Ctsa	cathepsin A	696 bp upstream
Neurl2	neuralized E3 ubiquitin protein ligase 2	Intron
Rr367364	regulatory region 367364	1585 bp upstream
Rr397479	regulatory region 397479	674 bp downstream
Rr569727	regulatory region 569727	788 bp distal
Rr569728	regulatory region 569728	51 bp proximal
Rr569729	regulatory region 569729	272 bp proximal
Rr569730	regulatory region 569730	1269 bp proximal
Tssr21656	transcription start site region 21656	685 bp upstream
Tssr21657	transcription start site region 21657	704 bp upstream
Tssr21658	transcription start site region 21658	782 bp upstream
Tssr21659	transcription start site region 21659	1589 bp upstream
Tssr21660	transcription start site region 21660	1604 bp upstream
Tssr21661	transcription start site region 21661	1664 bp upstream
Tssr21662	transcription start site region 21662	1838 bp upstream
Tssr21663	transcription start site region 21663	1899 bp upstream
Tssr21664	transcription start site region 21664	1930 bp upstream
Tssr27546	transcription start site region 27546	1261 bp downstream