rs258214262 SNP Detail

Summary

• ID
  rs258214262
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:25105732 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGCCAATAG AAACTTTGGT
  TCAGGATTGA CAGTTTGTGC AAGCCTCTTG ACAGCAGTCC TGTCTCGCGA GACCCGCCCC
  CGCGCGAAGC TGCCATAGAG CCCGCCTTCG GCTGCCGGGC CAATGCAGGG CGGGGGCGGG
  GATTGTTTGC GTCGCGGCCG GAACGGAAAG TGGGTCAGCG CCGGGGGAGC TTTTTGGCCG
  Y
  AGGTGAGCCG CGCCGGCCCA GCCCGGTCAG GCCCGGCGGC CGGCGGGTTG ACCTTGCAGG
  CGGTCAAGCC GGCCACCCGT TGTTCCCTGG CGGTGGCGCT CGGGAGTCTG GGCGGGGGCC
  TCGGAGTCAG GCGTCAGGGA CGGCATCGCT GTGGCGAGAT CCGCGAGCCT TTGGCGAGGG
  AAGCAACCTT CAGCCCCGCG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss397865569	MGP_WTSI_17_25023703	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258214262					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss397865569	MGP_WTSI_17_25023703	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:25105732 () rs orientation: forward

Symbol	Name	Function Class
Cpgi8747	CpG island 8747	within coordinates
Nubp2	nucleotide binding protein 2	409 bp upstream
Rr339336	regulatory region 339336	within coordinates
Rr405096	regulatory region 405096	190 bp downstream
Spsb3	splA/ryanodine receptor domain and SOCS box containing 3	within coordinates
Tssr143106	transcription start site region 143106	787 bp downstream
Tssr143107	transcription start site region 143107	767 bp downstream
Tssr143108	transcription start site region 143108	741 bp downstream
Tssr143109	transcription start site region 143109	723 bp downstream
Tssr143110	transcription start site region 143110	within coordinates
Tssr143111	transcription start site region 143111	120 bp upstream
Tssr146788	transcription start site region 146788	888 bp upstream
Tssr146789	transcription start site region 146789	865 bp upstream
Tssr146790	transcription start site region 146790	849 bp upstream
Tssr146791	transcription start site region 146791	813 bp upstream
Tssr146792	transcription start site region 146792	405 bp upstream
Tssr146793	transcription start site region 146793	364 bp upstream