rs258225822 SNP Detail

Summary

• ID
  rs258225822
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:32903843 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCACAAGAT TCAAGGATTT
  TTGTGGAAGT TGGAGCGAAA TGACTGTAAG AGCCAGAAGT CTAGAAGAAT AGGACCAAAC
  AATGCCTTCT GGGTATGGTA GGACCTCTGC TCTAGTGAGC TCACAGACGC TGCAGTGAAC
  CCAAGATAAC ACCAAGCTCA AGATAACCAA CATTCCAGCA CTGGGGAAGG GATGGTGAGC
  Y
  CTAGCCCCTA GTTGAGGAGT TATTGGCAGC TGATGGTGGT GGGAGAGTCA GCTTTCTCTG
  AGGGTCTGAT CACTGGTAAG CCTTTTGTCC CTGATAGGCA CTACACCTAT TTGAATCAGT
  AAGTTATTTA AAAAAAAAAA AAAGGGAGGG GTGTGGGTAA GGAGCCAATC TGGAAGGAAT
  TAAGCGGGAG AGTAGGAGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325362842	CHEV_17_32821814	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258225822					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:32903843 () rs orientation: forward

Symbol	Name	Function Class
Cyp4f15	cytochrome P450, family 4, subfamily f, polypeptide 15	762 bp upstream
Rr339615	regulatory region 339615	757 bp proximal
Tssr143733	transcription start site region 143733	716 bp upstream
Tssr143734	transcription start site region 143734	741 bp upstream
Tssr143735	transcription start site region 143735	770 bp upstream
Tssr143736	transcription start site region 143736	786 bp upstream
Tssr143737	transcription start site region 143737	1224 bp upstream