rs258230696 SNP Detail

Summary

• ID
  rs258230696
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:128770555 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGCTCCAGG AAGGGAGGGT
  GAGCATTCTG CCTCTGCATA GGATGGACCG AGTGGGCAAG GGCAGAGTGG ATGAGGGTGC
  CATGGGAGGC AAAGAGGAGA GAAAACAGAA ATAGCTACTG TCAAAGCATC ACCATGAGAT
  AGCGTGAGGA CTGCAGGGCA TGGAGGCCAG GAGTGGTGTG GCTTAACACA GCAGGGAGAC
  W
  AGAGGAAGAG CTGAGAAGGC CTGACAGTCT TCAGTGATGG TCACAGACGG TGGCAGAGAC
  TGTCTGAAAA ATAGAGACTG TCTGAGCAGT AGCAAGAAAT GGTGGCAGCT GTCACCACCA
  TCGCCAGAGA CAGCAGCAGC AGCAGCAGCA GCAGCAGCAG CAGCAGCAGC AGCAGCAGCA
  GCAGGAGGAT ACAGTAAAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323536818	CHEV_10_128371742	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258230696					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:128770555 () rs orientation: forward

Symbol	Name	Function Class
Cpgi2425	CpG island 2425	422 bp distal
Gm67752	predicted gene, 67752	1119 bp downstream
Itga7	integrin alpha 7	within coordinates
Rr441374	regulatory region 441374	856 bp distal
Rr441375	regulatory region 441375	632 bp proximal
Rr441376	regulatory region 441376	902 bp proximal
Tssr96480	transcription start site region 96480	923 bp downstream
Tssr96481	transcription start site region 96481	905 bp downstream
Tssr96482	transcription start site region 96482	858 bp downstream