rs258240256 SNP Detail

Summary

• ID
  rs258240256
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:60630274 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTTATGC TCAAAGCCCA
  TGATACTGGA CCAAGTCCTT ATACTTCCAA TTCTATTGTT CTACCAACCT GTTAGCCTCT
  TTTCCCATTA ATGATCAACT TTATAAGATT GTATTAGGCC AACCTGGATA ATCCAGGATC
  ATTGCCTTAT TTTAAGTTCT GCTGCTTATG AATCAGAATT ATATCTCTAG TCTTAATTCT
  Y
  CTCTGTCGTA TAGAATGACA TACTCAGATC CAGGGTCTCT TTAGAGCTGC ATTATTCTGC
  ATGATAAAAC TAATTCTTAG GTAAAGGGAA AGGCTAAGAA CCATCTTGTG ATTTTTTTTC
  CAGTTTCTTT CAGAGGCATG TAGTGTATAA TTTACAGATG GACACCTACA ATCCTTGAAA
  TCCCCTTTTA AGTGATTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss324986538	CHEV_15_60589980	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258240256					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:60630274 () rs orientation: forward

Symbol	Name	Function Class
Gm48947	predicted gene, 48947	1806 bp upstream
Rr303268	regulatory region 303268	1327 bp proximal
Rr313850	regulatory region 313850	1328 bp proximal