rs258240722 SNP Detail

Summary

• ID
  rs258240722
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:6920090 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGATCTGTGA CAGTTCTCGT
  CGCCCAGGAA ACTAGGGCCG GGCGCCCTTA GAACTGGAGG GAGGAGGCAG GCCCGGGTCA
  GGGGCCTCGA GATCGGGCTT GGGGTGAGAC CTATTCCCGG TCCTAACGGG CAGGGGGAGC
  GCACTAGTGT CTGGACAGAG CTCTGAAGAG AGATTTAATA TTCGGGCGAC AGCCAGGCAG
  M
  CTGAGCAGAC AAATGAGGGA TTGGGAAGAT TTGGGGAGTT GAGCTACCGT GGTGGGAGAG
  GGAGACAGGA GTACCTCTCC TCTGCTTCTC ATAAACACTG TTTGCCTAGC TGTGTAGTGA
  GTACTTCTTA CCTTGTCTCT ACAGCCCAGA GTATGTTCCA GATCCCAGAG TTTGAGCCGA
  GTGAGCAGGA AGACGCTAGT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss401683388	MGP_WTSI_19_7017212	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258240722					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss401683388	MGP_WTSI_19_7017212	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:6920090 () rs orientation: forward

Symbol	Name	Function Class
Bad	BCL2-associated agonist of cell death	within coordinates
Cpgi10534	CpG island 10534	70 bp distal
Gpr137	G protein-coupled receptor 137	272 bp upstream
Rr405833	regulatory region 405833	1059 bp downstream
Rr405834	regulatory region 405834	722 bp downstream
Rr405835	regulatory region 405835	17 bp downstream
Rr543510	regulatory region 543510	389 bp distal
Rr543511	regulatory region 543511	837 bp distal
Rr543512	regulatory region 543512	148 bp distal
Tssr154697	transcription start site region 154697	832 bp downstream
Tssr154698	transcription start site region 154698	790 bp downstream
Tssr154699	transcription start site region 154699	138 bp downstream
Tssr154700	transcription start site region 154700	115 bp downstream
Tssr154701	transcription start site region 154701	84 bp downstream
Tssr157902	transcription start site region 157902	1204 bp upstream
Tssr157903	transcription start site region 157903	892 bp upstream
Tssr157904	transcription start site region 157904	279 bp upstream