rs258244074 SNP Detail

Summary

• ID
  rs258244074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51185411 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCGGCGCTT ATGCAACATA
  CAATCAGTTC AGTCGAAAGA ACTGCACTTT AAAAAACTTG TACCTAGAAA ATATTCTAGA
  AGCATCACTA AGGAAGTCAG GAGTCTCCAA CTACTTCAAA AACTGACTTG GTCCTGTCTT
  CTCGACAGAA GTCAGAGTAC ACTAGACAGG TAATTAGTAA ACAGAAAAGA GCCGCCCGGC
  W
  GCCTCGGGGA GACTGGAGTC GCTGGGTTTG CTGGTCATGA AATTCGTGTG CCCTCTCTTG
  TATTTGCTTG ACTTGGACAA ATGAACGTAT TCGTTCATAG CTTAAAGATA TCTTCAGACA
  GCTTTTAAAA AACTCGTTTA CCTTGAAACT GGCCTTACAA ATACACACTG TAACAGGAAA
  GGAAAATAAT GGCCAATTAG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357926583	MGP_WTSI_3_51081912	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258244074					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357926583	MGP_WTSI_3_51081912	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51185411 () rs orientation: forward

Symbol	Name	Function Class
4930577N17Rik	RIKEN cDNA 4930577N17 gene	within coordinates
Cpgi13132	CpG island 13132	189 bp distal
Elf2	E74-like factor 2	within coordinates
Gm64767	predicted gene, 64767	1379 bp downstream
Rr397655	regulatory region 397655	1646 bp downstream
Rr576259	regulatory region 576259	1716 bp distal
Rr576260	regulatory region 576260	633 bp distal
Rr576261	regulatory region 576261	within coordinates
Rr576262	regulatory region 576262	500 bp distal
Tssr29048	transcription start site region 29048	1716 bp downstream
Tssr29049	transcription start site region 29049	1127 bp downstream
Tssr33194	transcription start site region 33194	1930 bp upstream
Tssr33195	transcription start site region 33195	684 bp upstream
Tssr33196	transcription start site region 33196	547 bp upstream
Tssr33197	transcription start site region 33197	505 bp upstream