rs258245739 SNP Detail

Summary

• ID
  rs258245739
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:124153649 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCCTCTT TTAGGAATAG
  TAGATCTAGG CCTCTACGAT TCTGTAACAC TACTTCGGAC AAGGAGGTCA AAGATTTTTC
  TAGATTAGTG ATGGACTTTT CAACTTCTTT AAGGTCATCG TGCATGGCAG CCTGGAGTTG
  TTGGAACTGC TGAGTGGCCA CTAGGGCGGT AGTCCCTGTT CCCACTCCAG CGGCAATTCC
  R
  CCCATAGTGA GTCCTCCTAA TAGTAGGGCC AGAGTTAGTG AGACGGGTTC TCTTTTATAT
  TTGGCTCGTC TTTCAAATTG GTGGTAAACA TAACTAGGGG AATGGTAGGT CACCCTTGGC
  CAAAGCTCGA CCAGGACACA GTAATCGGTG GTGAGGTCAA GTATGGTGGT TGAGATACAG
  GGAGTGAGTC CAGTACTACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
ss376343698	MGP_WTSI_8_125950810	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	CBA/J	DBA/1J	DBA/2J	KK/HlJ	LG/J	LP/J	MA/MyJ	NOD/ShiLtJ	NON/ShiLtJ	NZW/LacJ	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ
rs258245739					SNP	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376343698	MGP_WTSI_8_125950810	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:124153649 () rs orientation: forward

Symbol	Name	Function Class
Mela	melanoma antigen	within coordinates
Tssr2728	transcription start site region 2728	563 bp downstream
Tssr79965	transcription start site region 79965	1500 bp upstream
Tssr83353	transcription start site region 83353	171 bp upstream
Tssr83354	transcription start site region 83354	648 bp downstream
Tssr83355	transcription start site region 83355	735 bp downstream
Tssr83356	transcription start site region 83356	812 bp downstream
Tssr83357	transcription start site region 83357	927 bp downstream
Tssr83358	transcription start site region 83358	1192 bp downstream