rs258257860 SNP Detail

Summary

• ID
  rs258257860
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:64084106 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGTCTTTTGG GGGGGGTACA
  GAAAGGGCTT TTGGGCTTGC AATGATGTTG TAATTTGCGT CTTACTCTGT TTTCAGTGAC
  AGTTGCCTGC TGTCAGTAAG CTGAATCAGA AGGTTGACGA AAATTATTGC TGAGCAGCTC
  AAAACTTTAA CTGAGATTTG AGACTTGAAA TGGTAACAGA AAGTTGTGAA TTTCATGGAT
  W
  AAAGTGTCAG GTGTGGCTGC TGAAAGTTGC TTTGCCTGCT GAGACAGTTT TTCGTTTTGC
  TAAGATTGAG GATGTGGGAA GTCTTGATCA GAATACTAAA GCTACTTACT TTATAGGTCT
  ATGCCTCTCA GAGAATGAGA GCTGGCAAGG GCAAAATGAG AAACCGACGG CGGATCCAGC
  GCAGGGGGCC CTGCATCATC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss377838359	MGP_WTSI_9_64024631	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258257860					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss377838359	MGP_WTSI_9_64024631	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:64084106 () rs orientation: forward

Symbol	Name	Function Class
Gm22455	predicted gene, 22455	299 bp upstream
Gm22571	predicted gene, 22571	882 bp downstream
Gm23136	predicted gene, 23136	65 bp downstream
Gm23344	predicted gene, 23344	1709 bp downstream
Rpl4	ribosomal protein L4	within coordinates
Rr681196	regulatory region 681196	1960 bp proximal
Snord16a	small nucleolar RNA, C/D box 16A	1302 bp downstream
Tssr85597	transcription start site region 85597	1852 bp downstream
Tssr85598	transcription start site region 85598	1398 bp downstream
Tssr85599	transcription start site region 85599	1211 bp downstream
Tssr85600	transcription start site region 85600	145 bp upstream
Tssr85601	transcription start site region 85601	550 bp upstream
Tssr85602	transcription start site region 85602	617 bp upstream
Tssr85603	transcription start site region 85603	888 bp upstream
Tssr85604	transcription start site region 85604	928 bp upstream
Tssr85605	transcription start site region 85605	1451 bp upstream
Tssr85606	transcription start site region 85606	1576 bp upstream
Tssr90132	transcription start site region 90132	964 bp downstream
Tssr90133	transcription start site region 90133	1519 bp downstream
Tssr90134	transcription start site region 90134	1571 bp downstream