rs258257964 SNP Detail

Summary

• ID
  rs258257964
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:114858494 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCCCCAGCA CCCTGCTCTG
  AGGATTGAGA CTGACGTAGA TGGAGTGTGA CGATCAGTAT TATTAGGATA CCATTGTGTT
  CTTGGTTTGG ACCCTTCCCA GCTGTTCCTG GTATTACACT GCTCAGATAA CGCGATAAAC
  CACAGGTGCT GGGTTAGTGA TTTCAAAACA GGCTTTCTCT GTATAACATC CTCAGCTGTC
  Y
  TAGAACTCAT TCTGTAAACC AGGCTGGCCT TGAACTTACA GAGATCCACC TGCCTCTGCC
  TTCCAAGTGC GAGATTAAAG GCCCTCATGT CGCCAGGTTT AGTACTTTTT AAAAGTCTTG
  GGAATGGGGT TGGAGAGTTC GATCAGCAGT TAAAAGCACA ATATATTGTT CTTTCGGAGG
  ACCAGAGTTC AGTTCCCAGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss376103487	MGP_WTSI_8_116655654	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258257964					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss376103487	MGP_WTSI_8_116655654	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:114858494 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21082	CpG island 21082	1696 bp proximal
Gm56821	predicted gene, 56821	within coordinates
Nudt7	nudix hydrolase 7	1820 bp upstream
Rr401147	regulatory region 401147	1655 bp upstream
Rr670351	regulatory region 670351	763 bp distal
Rr670352	regulatory region 670352	268 bp distal
Rr670353	regulatory region 670353	1156 bp proximal
Rr670354	regulatory region 670354	1899 bp proximal
Tssr79531	transcription start site region 79531	1815 bp upstream
Tssr79532	transcription start site region 79532	1847 bp upstream
Tssr79533	transcription start site region 79533	1881 bp upstream
Tssr83006	transcription start site region 83006	744 bp upstream
Tssr83007	transcription start site region 83007	159 bp upstream
Tssr83008	transcription start site region 83008	150 bp upstream