rs258276969 SNP Detail

Summary

• ID
  rs258276969
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:138800680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGCTTCTTg gggcagaaga aataggtcag
  tggttgaaaa agctttctgg ggagcaggct aggctctctg taaacaccca catggacagt
  tcttgactct ctgtgactct agtttcagag gatctgacac cctcttcATT Catatgtgta
  W
  atatatatat atatatatat atatatatat atGGtttgtt tttttttgag acagggtttc
  tctgtgtagc cctagctgtc ctggaactca ctttgtagac caggctggcc tcgaactcag
  aaatctgcct gcctctgcct cccgagtgct                                 
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322467803	CHEV_7_146406663	CHEVERUD	SCREENING_POP	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258276969					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:138800680 () rs orientation: forward

Symbol	Name	Function Class
Lrrc27	leucine rich repeat containing 27	within coordinates
Tssr69706	transcription start site region 69706	145 bp downstream