rs258279540 SNP Detail

Summary

• ID
  rs258279540
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:145066371 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTGCTGTGG GGAGTCCTGG
  GAGCCTTCCT CCAGCAGAAG ACTAGGATAT GACCAGGCAG GCAGCGCCAG GGCACCACAG
  GGGCAGCTCA GCACTGCTCC AGTCTGCTGT AGGTTCAGGA CTGGCCCTCA GAAACCTCCC
  AGGTCTCTAT TACGTCACGG ACATCTAGGC CCTGATCCTT ACTTTGTGCA AAAGCCTGAC
  M
  GTGTCTTCCC AGGTAGGTGT GTGCCTAAAC CCTGCTGGTA CTGCCATGAG CAAAGATAGA
  GATAGCTGAT AGAGAAACTG CCAAACAAGG AATTACGATG TTGTCGTTTA ATCTGCCAAA
  TATACAAGTT GAATTTGAGG AGCATGTCTT GTCTGGGTGA CGCATGGTAA CCAGAGGTTT
  CTTGAAATGA TCAATGGGTA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss367055521	MGP_WTSI_5_145890430	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258279540					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss367055521	MGP_WTSI_5_145890430	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:145066371 () rs orientation: forward

Symbol	Name	Function Class
Arpc1b	actin related protein 2/3 complex, subunit 1B	1375 bp downstream
Pdap1	PDGFA associated protein 1	within coordinates
Tssr49735	transcription start site region 49735	1646 bp downstream
Tssr49736	transcription start site region 49736	1623 bp downstream
Tssr49737	transcription start site region 49737	1562 bp downstream
Tssr49738	transcription start site region 49738	1554 bp downstream
Tssr49739	transcription start site region 49739	1527 bp downstream
Tssr49740	transcription start site region 49740	1444 bp downstream
Tssr49741	transcription start site region 49741	1883 bp upstream
Tssr54417	transcription start site region 54417	1502 bp upstream
Tssr54418	transcription start site region 54418	1405 bp upstream