rs258282074 SNP Detail

Summary

• ID
  rs258282074
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:84071554 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTAATTTAG GGCAGCTATT
  GGAGATAAGA CTTAAGAAGG TGATAGGAAG CTAGAGTTCA GAGGAAAATG TGAGTGGAGA
  TTCTGCCCTC ATCTGGGCCG ATATGTATAT AGTTTGGATA TGTGTATCCG GCAAGTGGAC
  ATTTCCAATA AGCTTTAAAA ATCAGGGGCT TCATGTAGGC CTTGTGGGTT TTTACAGAAG
  Y
  ATACAGGAGT ATAACTAATC AGAGGAAATA ATTTTAGATG GTTTTGTTAG GAGATTTAAG
  ACAAAAGGCT CTAGGATTTC CTGATTCCAT GTCTACATAA ATTGTTTCAG AAACTTCCCA
  ACGTGCAGAA TAAATCTAAT AACCTGGCCT TCACTCTCAG ACGTTGTTCT CTCTTGACTT
  TTCTGTTTCA TTTTTCCCTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss384086746	MGP_WTSI_11_83994230	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258282074					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss384086746	MGP_WTSI_11_83994230	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:84071554 () rs orientation: forward

Symbol	Name	Function Class
Acaca	acetyl-Coenzyme A carboxylase alpha	within coordinates
Cpgi3430	CpG island 3430	220 bp distal
Rr453130	regulatory region 453130	4 bp distal
Rr453131	regulatory region 453131	1278 bp distal
Rr453132	regulatory region 453132	731 bp distal
Tssr103798	transcription start site region 103798	1071 bp downstream
Tssr103799	transcription start site region 103799	1041 bp downstream
Tssr103800	transcription start site region 103800	879 bp downstream
Tssr103801	transcription start site region 103801	865 bp downstream
Tssr103802	transcription start site region 103802	851 bp downstream
Tssr103803	transcription start site region 103803	368 bp downstream