rs258282095 SNP Detail

Summary

• ID
  rs258282095
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:76132128 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTACAAAG GTCATGGCCA
  GTTGTTTTTG TTGTTGTTGT TGTTTTCTTC CTTGGTCCGC AGCAGGTATG GCTGTCACTG
  GTTTCAGTCT CTCAGAGCTA ACTGTTCTCT CTTTCTCCTC TAGGGGCAGC CACAGAACCC
  GAGGCCATGT CCCATGAAAA GAGTTTCTTG GTGTCTGGGG ACAGTTATCC TCCCCAAAAC
  M
  TTGTGGGGCC CCAAGCCCCT ATGCCTCCCT ATGTTCAGGC TCCCTACCCT GGGGCCCCAT
  ACCCACAGGC CCCTTTCCAG CCCTCTCCCT ATGGTCAGCC AGGATATCCC CATGGTCCCA
  GCCCCTATCC ACAGGGTGGT TACCCTCAAG GGCCCTACCC TCAAGGAGGC TACCCACAGG
  GGCCATACCC ACAGAGCCCC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss394611508	MGP_WTSI_15_76078358	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258282095					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss394611508	MGP_WTSI_15_76078358	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:76132128 () rs orientation: forward

Symbol	Name	Function Class
Cpgi7222	CpG island 7222	218 bp distal
Grina	glutamate receptor, ionotropic, N-methyl D-aspartate-associated protein 1 (glutamate binding)	within coordinates
Mir6953	microRNA 6953	263 bp upstream
Tssr4637	transcription start site region 4637	1339 bp upstream
Tssr131720	transcription start site region 131720	1122 bp downstream
Tssr131721	transcription start site region 131721	1097 bp downstream
Tssr131722	transcription start site region 131722	1072 bp downstream
Tssr131723	transcription start site region 131723	905 bp downstream
Tssr131724	transcription start site region 131724	520 bp downstream
Tssr131725	transcription start site region 131725	387 bp downstream
Tssr131726	transcription start site region 131726	319 bp downstream
Tssr131727	transcription start site region 131727	252 bp downstream
Tssr131728	transcription start site region 131728	233 bp downstream
Tssr131729	transcription start site region 131729	92 bp downstream
Tssr131730	transcription start site region 131730	72 bp downstream
Tssr131731	transcription start site region 131731	5 bp downstream
Tssr131732	transcription start site region 131732	4 bp upstream
Tssr131733	transcription start site region 131733	49 bp upstream
Tssr131734	transcription start site region 131734	66 bp upstream
Tssr131735	transcription start site region 131735	133 bp upstream
Tssr131736	transcription start site region 131736	177 bp upstream
Tssr131737	transcription start site region 131737	350 bp upstream
Tssr131738	transcription start site region 131738	517 bp upstream
Tssr131739	transcription start site region 131739	568 bp upstream
Tssr131740	transcription start site region 131740	587 bp upstream
Tssr131741	transcription start site region 131741	673 bp upstream
Tssr131742	transcription start site region 131742	871 bp upstream
Tssr131743	transcription start site region 131743	888 bp upstream
Tssr131744	transcription start site region 131744	915 bp upstream
Tssr131745	transcription start site region 131745	1048 bp upstream
Tssr131746	transcription start site region 131746	1090 bp upstream
Tssr131747	transcription start site region 131747	1148 bp upstream
Tssr131748	transcription start site region 131748	1309 bp upstream
Tssr131749	transcription start site region 131749	1339 bp upstream
Tssr131750	transcription start site region 131750	1546 bp upstream
Tssr131751	transcription start site region 131751	1618 bp upstream
Tssr134959	transcription start site region 134959	1294 bp upstream
Tssr134960	transcription start site region 134960	267 bp upstream
Tssr134961	transcription start site region 134961	86 bp downstream
Tssr134962	transcription start site region 134962	216 bp downstream
Tssr134963	transcription start site region 134963	1381 bp downstream
Tssr134964	transcription start site region 134964	1431 bp downstream
Tssr134965	transcription start site region 134965	1463 bp downstream
Tssr134966	transcription start site region 134966	1577 bp downstream
Tssr134967	transcription start site region 134967	1973 bp downstream