rs258285373 SNP Detail

Summary

• ID
  rs258285373
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:102526036 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCGCAATTG GTTGCTTTTA
  TCCAGTCCGC TGTGCTCCTC GGTGTCCTAA TTCTTGGCGT AACTGGCTCG AGAATAGCCG
  TATCACGCAG AAGCCATAAT GGCGGACGCG GGCTCTCCAC GCCCTGAACA CCCACTCAGT
  TTAAGAGCAA AGTCGTTTTT CTAAGCCATA GGTTCACTCA CACAGCACCA AACGATCAGC
  W
  GCAACAGTAC ACGCAAATAA GAGGCATAGA TATTCCAGGT AGTGCAATAA CTCACAAAAC
  CATATTTCCA TCCACCAAGC GCCCCGTTGG GCCGTGAAAA AAAAAATTTA AAGCAGGTAT
  CCACAGCCCC GATGGGCAAA AGAAAAAGAA AAAAAAATAA TAACAGCAGG TATCCGAGGC
  CCCGTTGGGC ATGGGAAAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss404206076	MGP_WTSI_X_100677769	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258285373					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A	T	A	A	A	A	A	T	A	A	A	A	A	A	T	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss404206076	MGP_WTSI_X_100677769	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:102526036 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22887	CpG island 22887	183 bp distal
Gm26992	predicted gene, 26992	725 bp downstream
Gm55587	predicted gene, 55587	1404 bp downstream
Rr693003	regulatory region 693003	within coordinates
Rr693004	regulatory region 693004	679 bp distal
Rr693005	regulatory region 693005	707 bp proximal
Rr693006	regulatory region 693006	814 bp proximal
Rr693007	regulatory region 693007	1712 bp proximal
Rr693008	regulatory region 693008	1798 bp proximal
Tsix	X (inactive)-specific transcript, opposite strand	within coordinates
Tssr161724	transcription start site region 161724	268 bp upstream
Tssr163949	transcription start site region 163949	1869 bp upstream
Tssr163950	transcription start site region 163950	1785 bp upstream
Tssr163951	transcription start site region 163951	1661 bp upstream
Tssr163952	transcription start site region 163952	1634 bp upstream
Tssr163953	transcription start site region 163953	1495 bp upstream
Tssr163954	transcription start site region 163954	120 bp downstream
Tssr163955	transcription start site region 163955	350 bp downstream
Tssr163956	transcription start site region 163956	402 bp downstream
Tssr163957	transcription start site region 163957	604 bp downstream
Tssr163958	transcription start site region 163958	775 bp downstream
Tssr163959	transcription start site region 163959	813 bp downstream
Xist	inactive X specific transcripts	within coordinates