rs258285498 SNP Detail

Summary

• ID
  rs258285498
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:108692194 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGCTTCAG TTTCCTGCTC
  CTCATCACTT CTTCAGACGG ACGCACTGGG CTTGGAAAGG GTCAGACCTC ATTCTTACCG
  TAATCTTTAC GGACCCCGGG CCTTCTTAAC ACTTTATTTT CTCACTGTAT CTTAGGCCAC
  TTTAGATTCC TTTTTATCTT CCCCAACTGC TTTTGTGGAT TTCTCGGGGT CAGGAGTACC
  R
  GGTCCGGGAG AGGGTTTAAG AGAAGGAAGT TGTACTTGAG GGCGCTCTTA ATTCTTGGGA
  TTGAGAAGAT ATGGCCCTTA AATTAGGACT AGGTTGTTTA AGAGTCCATT CATGTGTCAT
  GTTAGGCGCT TGGGACGCCT CCAGGAACCG TCACCTTCCC GCCAGAAGAA ATAGGTCGCT
  TGGGAAGCCC TCAGGAACCG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362789958	MGP_WTSI_4_108507602	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258285498					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A	A	G	A	A	A	A	A	A	G	A	A	A	A	A	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362789958	MGP_WTSI_4_108507602	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:108692194 () rs orientation: forward

Symbol	Name	Function Class
Btf3l4	basic transcription factor 3-like 4	1383 bp upstream
Cpgi14564	CpG island 14564	858 bp distal
Cpgi14565	CpG island 14565	within coordinates
Rr376990	regulatory region 376990	within coordinates
Rr597224	regulatory region 597224	1454 bp distal
Rr597225	regulatory region 597225	893 bp distal
Rr597226	regulatory region 597226	386 bp distal
Tssr38313	transcription start site region 38313	380 bp downstream
Tssr38314	transcription start site region 38314	292 bp downstream
Tssr38315	transcription start site region 38315	246 bp downstream
Tssr38316	transcription start site region 38316	190 bp downstream
Tssr42738	transcription start site region 42738	1400 bp upstream
Tssr42739	transcription start site region 42739	1371 bp upstream
Tssr42740	transcription start site region 42740	743 bp upstream
Txndc12	thioredoxin domain containing 12 (endoplasmic reticulum)	within coordinates