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rs258287501 SNP Detail
Summary
  • ID
    rs258287501
  • Variation Type
    SNP
  • Alleles
    A
Genome Location and Flanking Sequence
  • Location
    Chr1:83430153 (GRCm39)
  • SNP Orientation to the Genome
    forward
  • SNP Reference Flanking Sequence
                                                GTCTCTAGCT GCATATGTGC
    ATATGAATCA GAAGATGGCC TAGTCGGAGG CCCATTTGTC TTGCAAACTT TATATGTCTC
    AGTACAGGAG AATGCCAGGG CCAAGAAGTG GGAGTGGGTG GATAGGGGAT TGGGGGTGGG
    GGGATATGGG AGACTTTGGG ATAGCATTGG AAATGTAAAT GAAGAAAATA CTTTAAAAAA
    A
    AGAGAGAGAG AGATAATGTT GCAAGCCTGT GGCACAAACT TGTAATCTCA GCTATTTGAG
    AGACTGAGGC AAAAAAAAAA AAAATCAAAA GTTTAAACAC ATACATACAT ACATACATAC
    ATACACATCA TACACGTGGT GGTGGGTTGT GTGTGTATAT AGATCAGAAA TCCTGGTATA
    TACCTAGTAC TGGTAAAAGG                                            
    
    A = A
    

    Note: Sequence in lower case indicates low-complexity or repetitive sequence
    BLAST SNP flanking sequence against the mouse Genome
SNP Assays
and
SNP Consensus
Strain alleles of submitted assays, and consensus values for this SNP
Legend
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
ss350323363 MGP_WTSI_1_83449007 EVA_MGPV3 EVA_MGPV3 f SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
SNP Consensus Information
SNP Consensus Type
129P2/OlaHsd
129S1/SvImJ
129S5/SvEvBrd
A/J
AKR/J
B10.RIII-H2 H2-T18/(71NS)SnJ
BALB/cByJ
BALB/cJ
BTBR T<+> Itpr3/J
BUB/BnJ
C3H/HeH
C3H/HeJ
C57BL/6J
C57BL/6NJ
C57BL/10J
C57BL/10SnJ
C57BR/cdJ
C57L/J
C58/J
CAST/EiJ
CBA/J
CE/J
CZECHII/EiJ
DBA/1J
DBA/2J
FVB/NJ
I/LnJ
KK/HlJ
LP/J
MA/MyJ
NOD/ShiLtJ
NON/ShiLtJ
NZB/BlNJ
NZO/HlLtJ
NZW/LacJ
PL/J
QSi3/Ianm
QSi5/Ianm
SEA/GnJ
SJL/J
SPRET/EiJ
ST/bJ
SWR/J
WSB/EiJ
ZALENDE/EiJ
rs258287501 SNP A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A A
Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter
Assay ID Submitter
SNP ID
Submitter
Handle
Population
ss orientation
Variation
Type
Alleles
ss350323363 MGP_WTSI_1_83449007 SC_MOUSE_GENOMES SC_MOUSE_GENOMES f SNP A/G
Gene/Marker
Associations
and
Function
Classes
MGI genes/markers associated with the SNP
Location: Chr1:83430153 () rs orientation: forward
Symbol Name Transcript Protein Function
Class
Allele Residue Codon
Position
AA
Position
Gm69621 predicted gene, 69621 1265 bp upstream
Gm71033 predicted gene, 71033 within coordinates

Contributing Projects:
Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
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last database update
12/17/2024
MGI 6.24
The Jackson Laboratory