rs258294371 SNP Detail

Summary

• ID
  rs258294371
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:5915156 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAACTTAG AGACCAATAG
  CCTGAACTCT GATGTCAGCA GTGAGTCTTC GGACAGTTCA GAGGAACTTT CACCCACGAC
  CAAATTTACC TCTGATCCCA TTGGTGAAGT CTTAGTCAAT TCAGGAAATC TGAGTTCCTC
  CGTCATTTCC ACACCTCCAT CTTCTCCAGA AGTGAACAGG GAATCTTCTC AACTATGGGG
  Y
  TGTGGGCCAG GAGACCTGCC CTCACCTGGG AAGGTTCGAA GTGGGACCTC TGGGAAGTCT
  GGTGACAAGG GTAATGGCGA CGCCTCCCCA GATGGCAGAA GACGGGTACA TCGGTGCCAC
  TTTAATGGCT GCAGGAAAGT TTACACGAAA AGCTCCCACT TGAAAGCACA TCAGCGCACT
  CACACAGGTC AGTCCCCTCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387606013	MGP_WTSI_13_5864403	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258294371					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387606013	MGP_WTSI_13_5864403	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:5915156 () rs orientation: forward

Symbol	Name	Function Class
Klf6	Kruppel-like transcription factor 6	within coordinates
Rr403559	regulatory region 403559	316 bp downstream
Tssr118246	transcription start site region 118246	1331 bp downstream
Tssr118247	transcription start site region 118247	1261 bp downstream
Tssr118248	transcription start site region 118248	660 bp downstream
Tssr118249	transcription start site region 118249	455 bp downstream
Tssr118250	transcription start site region 118250	389 bp downstream
Tssr118251	transcription start site region 118251	354 bp downstream
Tssr118252	transcription start site region 118252	296 bp downstream
Tssr118253	transcription start site region 118253	1253 bp upstream
Tssr118254	transcription start site region 118254	1280 bp upstream
Tssr121319	transcription start site region 121319	843 bp upstream
Tssr121320	transcription start site region 121320	806 bp upstream
Tssr121321	transcription start site region 121321	795 bp upstream
Tssr121322	transcription start site region 121322	754 bp upstream