rs258294563 SNP Detail

Summary

• ID
  rs258294563
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:23942862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGAGAGC TAAATATGAA
  TGCTCATGGC CTAGGAACAC AAATTCAGAT TCTTCCAAGT ACTGTAGTTT GCTTTGGGAG
  TGTTCCATGA CATTTTACTA GTTATACTTG ACTTTTTTTA ATATTATTGT TTTAGATGGT
  TTGCCTACAT GTATTTCTGT GCCTCTTTTA TGATTGGTAC TCAGAGACCA GCAGTGGGAA
  Y
  TGGGACTCCT GGGACTGCAG TTACAAGAGA TTTTGAGACA CCATGTGGGT GCGGGTGCGG
  GTGCGGGTGC TAGGAATCAA ATGTAGGTCC TCTGGAAGAG CAGCCAGTGC TCTTAACCAC
  CGAACCATCT GTTCACTCTT CTTTTATCTT TTAAATTTTA CATTTAAAAA ATTATTTTGT
  GATCTTGTGT GTGTGTTAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss387989605	MGP_WTSI_13_23850748	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258294563					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss387989605	MGP_WTSI_13_23850748	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:23942862 () rs orientation: forward

Symbol	Name	Function Class
4930558J22Rik	RIKEN cDNA 4930558J22 gene	1241 bp upstream
Cpgi5375	CpG island 5375	1382 bp distal
Cpgi5376	CpG island 5376	1800 bp proximal
H4c1	H4 clustered histone 1	1916 bp downstream
H4c2	H4 clustered histone 2	1470 bp downstream
Rr388131	regulatory region 388131	1021 bp downstream
Rr388132	regulatory region 388132	917 bp upstream
Rr475943	regulatory region 475943	1856 bp distal
Rr475944	regulatory region 475944	751 bp distal
Tssr118864	transcription start site region 118864	1884 bp downstream
Tssr121748	transcription start site region 121748	1250 bp upstream