rs258298896 SNP Detail

Summary

• ID
  rs258298896
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:72540733 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGAATGTCA CCCAGCAGCA
  TCATAGCACT ATTCTGGGGC ATGTGCTCCA CAGCCTGGCA ATCTCTGCTG AGCTGGGCAG
  ACACAGGGCA AGGGCACTGG CCAAAGGCCA GGAGTCAGGG CCTCAATCCG GTCCCCGTGC
  TGGTAGTAAG GAGGGGCAAG CAGCAAGGAG ACCTGGTGGA AACAGAAAGG TGAAGCCCTC
  M
  GTGTGTTTCT CTGAGTGGGG GTGGTCTGGG GGCCATGGCT CACTTCAACA GGTCTCCCTT
  CCCTTCCTGT CCCTCTCCTT GGCTAGTCAC TTTTCTTTTT CAATTCGTCT CTCTCTCATT
  TCAGAAAAGT TTACAAGGCC CAGTAGGGCA GTGCAACCTC CACCAGCTGA GGGGACAAGT
  GTTGCATAGG TGTTAAATTC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss403771621	MGP_WTSI_X_70742466	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258298896					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	C	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss403771621	MGP_WTSI_X_70742466	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:72540733 () rs orientation: forward

Symbol	Name	Function Class
Bgn	biglycan	1194 bp downstream
Rr7747	regulatory region 7747	1996 bp distal
Tssr161241	transcription start site region 161241	1995 bp downstream
Tssr161242	transcription start site region 161242	1824 bp downstream
Tssr161243	transcription start site region 161243	1795 bp downstream
Tssr161244	transcription start site region 161244	1725 bp downstream
Tssr161245	transcription start site region 161245	1675 bp downstream
Tssr161246	transcription start site region 161246	1532 bp downstream
Tssr161247	transcription start site region 161247	1497 bp downstream
Tssr161248	transcription start site region 161248	1239 bp downstream
Tssr163553	transcription start site region 163553	1956 bp upstream
Tssr163554	transcription start site region 163554	1931 bp upstream
Tssr163555	transcription start site region 163555	1833 bp upstream