rs258302633 SNP Detail

Summary

• ID
  rs258302633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:35962144 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTAGGTAG GATTAGCCCA
  AGCTGGGCAG ATAAGGGAGG GGACTTGGTC AAAGGACAGA GGTACAGATG GAATAGGTGC
  TGTCTCAAAA CTGCTGTTCC CACCAGGCGC AGGGCTGAGA TTTAGTTCTT AGCTAGTTAT
  CTACTGAATG TTGCTTGGTT CCAGGTACTA TTACAGGCTC CCTGTTCATA GGCCACAGCT
  Y
  TAGGGCACCA GTGTACATGC TTTGCCCCAG GATTATAGTT GGGTAGGAGC CTGCCTCCTA
  AAAAACTCAA AATGTCCTCT TTCTGATTAG TTTCTTCATC TGTGAAATGG GAGCAGGACT
  CTGCCTCCTT TTTTCTTCCG TTGGAATTAG GGTCTACTGA ATGCAGGCAA GTGTATTTGG
  GAAGGGTACG GTCTTTGAAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss400266022	MGP_WTSI_18_35988745	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258302633					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss400266022	MGP_WTSI_18_35988745	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:35962144 () rs orientation: forward

Symbol	Name	Function Class
Cpgi9844	CpG island 9844	69 bp proximal
Cxxc5	CXXC finger 5	306 bp upstream
Gm29417	predicted gene 29417	1298 bp downstream
Gm50371	predicted gene, 50371	within coordinates
Tssr150566	transcription start site region 150566	276 bp downstream
Tssr150567	transcription start site region 150567	223 bp downstream
Tssr150568	transcription start site region 150568	639 bp upstream
Tssr150569	transcription start site region 150569	688 bp upstream
Tssr150570	transcription start site region 150570	707 bp upstream
Tssr150571	transcription start site region 150571	737 bp upstream
Tssr150572	transcription start site region 150572	749 bp upstream
Tssr150573	transcription start site region 150573	1000 bp upstream
Tssr150574	transcription start site region 150574	1088 bp upstream
Tssr150575	transcription start site region 150575	1209 bp upstream
Tssr150576	transcription start site region 150576	1880 bp upstream
Tssr152918	transcription start site region 152918	1034 bp downstream