rs258304317 SNP Detail

Summary

• ID
  rs258304317
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:91735259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGCCGACA GCATTCCAGT
  CCTGCCTCTC GGGACGGGGC AATGCTCTAG CAACCAGTCT AACAGGTGCC AGCCCAGTTC
  CTCTCTCCAA GATGCAGACA CAAGCCAGGA AGGCACCTTA GAGAAGGCCC CTCACAGTCC
  CACTCAAACC TGAGACCCCT GTCCCTATGG ACACTGTAAA TACCTCTGTG TGCACACCCC
  Y
  TCCTTCATCA AGCCCCAAAC CACACACACA ACAAAACCCA GATACTCCAA GATGGAGAGG
  GGCATCCCGG AAGCCAGAGC AGTGCTCCCT CCTCCCCTCC TCCATCTGAT CGCCTAGGAG
  TCAGACCTTC ACAGGAAACT GGCTGTCCAT GCTCTCTGGG AGGGAGGAGT GGTGTCATTG
  TCATTACAGG CATGTTCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss369190324	MGP_WTSI_6_91708272	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258304317					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss369190324	MGP_WTSI_6_91708272	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:91735259 () rs orientation: forward

Symbol	Name	Function Class
Rr379752	regulatory region 379752	within coordinates
Slc6a6	solute carrier family 6 (neurotransmitter transporter, taurine), member 6	within coordinates
Tssr1939	transcription start site region 1939	1156 bp downstream
Tssr57750	transcription start site region 57750	1758 bp downstream
Tssr57751	transcription start site region 57751	1654 bp downstream
Tssr57752	transcription start site region 57752	1284 bp downstream
Tssr57753	transcription start site region 57753	449 bp downstream
Tssr57754	transcription start site region 57754	353 bp downstream
Tssr57755	transcription start site region 57755	257 bp downstream
Tssr57756	transcription start site region 57756	217 bp downstream
Tssr57757	transcription start site region 57757	192 bp downstream
Tssr57758	transcription start site region 57758	156 bp downstream
Tssr57759	transcription start site region 57759	57 bp upstream
Tssr57760	transcription start site region 57760	113 bp upstream
Tssr57761	transcription start site region 57761	130 bp upstream
Tssr57762	transcription start site region 57762	158 bp upstream
Tssr57763	transcription start site region 57763	185 bp upstream
Tssr57764	transcription start site region 57764	210 bp upstream
Tssr57765	transcription start site region 57765	250 bp upstream
Tssr57766	transcription start site region 57766	272 bp upstream
Tssr57767	transcription start site region 57767	339 bp upstream
Tssr57768	transcription start site region 57768	362 bp upstream
Tssr57769	transcription start site region 57769	554 bp upstream
Tssr57770	transcription start site region 57770	661 bp upstream
Tssr62095	transcription start site region 62095	48 bp downstream
Tssr62096	transcription start site region 62096	323 bp downstream
Tssr62097	transcription start site region 62097	538 bp downstream