rs258307890 SNP Detail

Summary

• ID
  rs258307890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:79405641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAAGAGG AAGAGGAGGA
  GGAAGAGGAG GAGGAGGAAG AGGAGGGGAA GAACGGAGTT GCAGGGGCTC GGTGGTTAAG
  AGCACTTACA GAGGACTTGG AGTCAGTTCC AGGACTCACG GGGCATTGGC AAATGTTAGT
  AGTGCCATCT TCTGTCTTAT ATATATGTGT GTGTGTGTGA CTATATGAAT ATATACACAC
  R
  TATTCAGGCA AAACTCTTAT ATACATAAAA TTTTTAATTA TAAAGAAAAA AGAAAATTTT
  ATGGTAAGTG CTCACTTTTT CAGGGTAAAT GTATCCCAAA CACAGCACTC AGACTTCATG
  TTTTAATACA GTTTGGTAGC TGTGTGTTTA ATCTCTATAA ATGAAAATAT TTACTTAATA
  TTTGAAGTAT TAAAACTTTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383980549	MGP_WTSI_11_79328317	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258307890					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383980549	MGP_WTSI_11_79328317	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:79405641 () rs orientation: forward

Symbol	Name	Function Class
D11Bhm166	DNA segment, Chr 11, Boehm 166	within coordinates
D11Bhm167	DNA segment, Chr 11, Boehm 167	84 bp distal
Evi2	ecotropic viral integration site 2	within coordinates
Evi2b	ecotropic viral integration site 2b	241 bp downstream
Nf1	neurofibromin 1	within coordinates
Tssr109486	transcription start site region 109486	754 bp downstream
Tssr109487	transcription start site region 109487	952 bp downstream
Tssr109488	transcription start site region 109488	1150 bp downstream
Tssr109489	transcription start site region 109489	1456 bp downstream
Tssr109490	transcription start site region 109490	1503 bp downstream
Tssr109491	transcription start site region 109491	1536 bp downstream
Tssr109492	transcription start site region 109492	1563 bp downstream
Tssr109493	transcription start site region 109493	1602 bp downstream
Tssr109494	transcription start site region 109494	1617 bp downstream
Tssr109495	transcription start site region 109495	1657 bp downstream
Tssr109496	transcription start site region 109496	1670 bp downstream
Tssr109497	transcription start site region 109497	1709 bp downstream
Tssr109498	transcription start site region 109498	1770 bp downstream
Tssr109499	transcription start site region 109499	1807 bp downstream
Tssr109500	transcription start site region 109500	1838 bp downstream
Tssr109501	transcription start site region 109501	1878 bp downstream
Tssr109502	transcription start site region 109502	1904 bp downstream
Tssr109503	transcription start site region 109503	1979 bp downstream