rs258308555 SNP Detail

Summary

• ID
  rs258308555
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:134945477 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCAACAA ATGCCCATTA
  GTATTGCATT AAGCTTGGTT TGTCACAGAA TTAACATTGT GGCCTTGAAA GGTCACCACA
  CAGAATTAGA CAGTGTCAGC CCAGTTCACA ATTATCTATT GTCTACTATT ATAATTATTA
  TTATTATATT ATATATAATA TAGTATATAA TATGATATAA TATAAAATGT AATATATAAT
  G
  TAATATATTA TTATTATATT TATCTATTAT ATCCCTATTA ATTCAGCCAC AGGAGAAGAA
  AAAAATTTCT TGCTCAGGTC TCATATTTTT TTCTCCCTGG GTCAGGGTTT CATGTAGCTC
  AGTCTGGCTT GAGATTCCTT GAGAGGGAAA TCTTGGTCTT CCTGCCTCTA CCCGACTCCT
  GAGCGCTACG ATTAAGGTAC                                            
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321351221	CHEV_4_134774081	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs258308555					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:134945477 () rs orientation: forward

Symbol	Name	Function Class
Clic4	chloride intracellular channel 4	within coordinates
Tssr43955	transcription start site region 43955	1770 bp upstream
Tssr43956	transcription start site region 43956	1739 bp upstream
Tssr43957	transcription start site region 43957	1489 bp upstream
Tssr43958	transcription start site region 43958	1353 bp upstream
Tssr43959	transcription start site region 43959	1332 bp upstream
Tssr43960	transcription start site region 43960	1180 bp upstream
Tssr43961	transcription start site region 43961	1121 bp upstream
Tssr43962	transcription start site region 43962	1075 bp upstream
Tssr43963	transcription start site region 43963	1016 bp upstream
Tssr43964	transcription start site region 43964	904 bp upstream
Tssr43965	transcription start site region 43965	446 bp downstream