rs258313469 SNP Detail

Summary

• ID
  rs258313469
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:103218102 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATACTCAAAT GGATTATACA
  AACTTCCAAC TTTCAAATAA TAAATGAGCA TGTCCCCCTC CTCCCTCCCG CCCTTCCTCC
  CATCTTTCCT CCCTCCCCAA CCCTCCCACA GTCCTAGACC TAAGTAAGGG CTGACTGTCC
  CTACTAACCA CTCCTGCGTT ACTGGGTCAC TGCCAGGTGA CTTCTAGAAG CGCTGCCTCC
  Y
  GCTCCCTGCC TGCTCCTAGC CTAGAAGCCT TAACCAACAA AACCTAAAGC TCGGCAAACA
  GCTGAAGAGA AAGGGCGCCT CCGCAGGCAG GAGGATTGCT TTCTACAATT TTAAGCCACA
  GGAGATCTAA TGTGTTGGGG GTAAATAGAA CTCTCCCCTG TTGCCAGTAC TAGAATTTAC
  TTCTACCTGT AACTTTAAAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss392294224	MGP_WTSI_14_103379883	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258313469					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss392294224	MGP_WTSI_14_103379883	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:103218102 () rs orientation: forward

Symbol	Name	Function Class
Cpgi6810	CpG island 6810	383 bp proximal
Kctd12	potassium channel tetramerisation domain containing 12	within coordinates
Mir5130	microRNA 5130	1883 bp downstream
Rr404259	regulatory region 404259	756 bp downstream
Tssr126949	transcription start site region 126949	539 bp downstream
Tssr126950	transcription start site region 126950	630 bp upstream
Tssr126951	transcription start site region 126951	701 bp upstream
Tssr126952	transcription start site region 126952	769 bp upstream
Tssr130057	transcription start site region 130057	1991 bp upstream
Tssr130058	transcription start site region 130058	900 bp upstream
Tssr130059	transcription start site region 130059	869 bp upstream
Tssr130060	transcription start site region 130060	143 bp upstream
Tssr130061	transcription start site region 130061	792 bp downstream
Tssr130062	transcription start site region 130062	1964 bp downstream