rs258318337 SNP Detail

Summary

• ID
  rs258318337
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:52221129 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAACAAGGAG ACTGAAGAGT
  CTACCTTAAC TGGAAGGTTG GAGATAGCTC CACAGTTCTT GCCGGTTAAT CACAGGGTTT
  TCCCTGCTTG AGATTCTTTT TTAACCCTAT GAACCAGAGG GCTCGTGTCA TCCCCATGAA
  TTAAGTTTCT CCCTTCTCCA GACCCACAGG AAAAGGGGCA GAATGTAGCA TCCTAAGATG
  W
  AAAGAGCCTG TCATGGAGGC CCTTTCTTCT CCTCCTGCTC CAAGCCTCAT CGACTGTATC
  CACTACCACA CGTCTTCTAA ATAAACTTTA CCCTCTAACT GCAATGCCAA CACCTTCACG
  ATCTCTCTGG GAAATGAGTA CCTTTCAGAT CGCCTCCCAA ATGTCCACCT TTTGGACCAG
  TCTGTGACTC AGAGACAGGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss391101626	MGP_WTSI_14_52603347	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258318337					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss391101626	MGP_WTSI_14_52603347	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:52221129 () rs orientation: forward

Symbol	Name	Function Class
Arhgef40	Rho guanine nucleotide exchange factor 40	1047 bp upstream
Cpgi6430	CpG island 6430	712 bp proximal
Gm62631	predicted gene, 62631	within coordinates
Rr491846	regulatory region 491846	223 bp distal
Rr491847	regulatory region 491847	676 bp proximal
Rr491848	regulatory region 491848	1270 bp proximal
Tssr125437	transcription start site region 125437	816 bp upstream
Tssr125438	transcription start site region 125438	854 bp upstream
Tssr125439	transcription start site region 125439	1024 bp upstream
Tssr125440	transcription start site region 125440	1154 bp upstream
Tssr125441	transcription start site region 125441	1185 bp upstream