rs258320149 SNP Detail

Summary

• ID
  rs258320149
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:129159752 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAAATAT AAAAGTGTAC
  CAACCTGTTT GTCTCGTTGA CTGGAGCAGG AGTTACACAG GTGGTTATGA GGTGCCCCTT
  TAGGAGCTGA GATTTAGGAG CTAACTCCTG TCCTCTAGAA GAGCAACAAT TGATCTTAAC
  TCCTCAGCCA TCTCTGCAGC CTCCTGCTGA TCCCAGTCTG TCCCCATCCT TGGCACTCAG
  W
  GTTATTCTCA GTCCTAGCCA GTCTATTCTT AGGGAGCAAA ATCTATGAAT AGCTTGGATG
  TTGTTTGCTT TCAGCCTGAT CTTCACTCTT TCTGTTTCTT GTTTCTTCAT TGGCCCTTTG
  TTCAATGACT GGAAGACTCC ATGTTTCCCT TTCATCTAGT CTTCTGTGAG CATTAGACAT
  CATTTATAAA CCAGGACCTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370045261	MGP_WTSI_6_129132807	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258320149					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T	A	T	T	T	T	T	A	T	T	T	A	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370045261	MGP_WTSI_6_129132807	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:129159752 () rs orientation: forward

Symbol	Name	Function Class
Clec2d	C-type lectin domain family 2, member d	within coordinates
Gm53342	predicted gene, 53342	within coordinates
Rr368193	regulatory region 368193	1400 bp downstream
Tssr59098	transcription start site region 59098	1850 bp downstream
Tssr59099	transcription start site region 59099	1821 bp downstream
Tssr59100	transcription start site region 59100	1776 bp downstream
Tssr59101	transcription start site region 59101	1482 bp downstream
Tssr59102	transcription start site region 59102	1428 bp downstream
Tssr59103	transcription start site region 59103	926 bp downstream
Tssr59104	transcription start site region 59104	856 bp downstream
Tssr59105	transcription start site region 59105	100 bp downstream
Tssr59106	transcription start site region 59106	64 bp downstream
Tssr59107	transcription start site region 59107	143 bp upstream
Tssr59108	transcription start site region 59108	209 bp upstream
Tssr59109	transcription start site region 59109	322 bp upstream
Tssr63546	transcription start site region 63546	44 bp downstream