rs258321876 SNP Detail

Summary

• ID
  rs258321876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:67855860 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATATTT TTTTGCAGTT
  CTCCAGGGAT CACTTCTTAT CGGTAATATT TGTCCATCTC TACAGACAGT GTTGGCTCAG
  ATACAGAAAA CGCTGGCTTT CAATTAAAGC AGCACAGAGC AACGAAGACT CAAGAGTTAA
  TGCCAGGAGC GCTTAAACCT TTATTTACTC TGTAATCGTT CCGCACCGCA TCCTTTCAAC
  R
  GTAAAGCTTT CAGGCACTAC ATTCGTTTTA AAAAATCAAT TTTCCCCCTA AAATTTAACT
  CCTTGCCTTT TCGCTACACG CCAAACACGA CCCCCAATCA CAGCATTTCT CTCTCAATAT
  TTACCACGAC AGTCACAAAT AAAGTGTGAG CACCACAAGA AGGCCCCTCC AGAATTAAAA
  AGGTTTCTCC CTTAATGTCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss383750462	MGP_WTSI_11_67778536	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs258321876					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G	A	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss383750462	MGP_WTSI_11_67778536	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:67855860 () rs orientation: forward

Symbol	Name	Function Class
Cfap52	cilia and flagella associated protein 52	within coordinates
Cpgi3072	CpG island 3072	400 bp proximal
Cpgi3073	CpG island 3073	1290 bp proximal
Rr449567	regulatory region 449567	1929 bp distal
Rr449568	regulatory region 449568	718 bp distal
Rr449569	regulatory region 449569	598 bp proximal
Rr449570	regulatory region 449570	1457 bp proximal
Stx8	syntaxin 8	1377 bp upstream
Tssr102288	transcription start site region 102288	1408 bp upstream
Tssr108559	transcription start site region 108559	572 bp downstream
Tssr108560	transcription start site region 108560	597 bp downstream